View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5082-Insertion-5 (Length: 688)

Name: NF5082-Insertion-5
Description: NF5082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5082-Insertion-5
NF5082-Insertion-5
[»] chr3 (1 HSPs)
chr3 (7-688)||(37787534-37788211)


Alignment Details
Target: chr3 (Bit Score: 605; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 605; E-Value: 0
Query Start/End: Original strand, 7 - 688
Target Start/End: Complemental strand, 37788211 - 37787534
Alignment:
Q  7 acatttgtcacctaaatcccctgaagctaaggtgtttgaaggacttggaaattctaccaaaacaaacagttccacccctatttccagcggtaattaattt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  37788211 acatttgtcacctaaatcccctgaagctaaggtgtttgaaggacttggaaattctaccaaaacaaacagttccacccctatttccagcggtaattaactt 37788112  T
Q  107 tagtagtaatactatatatagtattgttattgagtgatttttgcttgtattgaaaattgaagctaatttgtgcccctaataatgtttaaggttctgctga 206  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  37788111 tagtagtaatactaaatatagtattgttattgagtgatttttgcttgtattgaaaattgaagttaatttgtgcccccaataatgtttaaggttctgctga 37788012  T
Q  207 gaagggatcaagctcaagttctgaggaaaagagtggtggtggattgggaaggaggtggctggtggcagaggtggtttgtgctattttaccatttcttttc 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37788011 gaagggatcaagctcaagttctgaggaaaagagtggtggtggattgggaaggaggtggctggtggcagaggtggtttgtgctattttaccatttcttttc 37787912  T
Q  307 atatctcacttcttcatcctagcttgaagttcaagtttgaatcatgatcaagatttagagaa--gactcattgcttgaattggatatattgatattggtt 404  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  || ||||| |||||||||||||||||||||||||||    
T  37787911 atatctcacttcttcatcctaacttgaagttcaagtttgaatcatgatcaagatttagagaatggaatcattacttgaattggatatattgatattggtt 37787812  T
Q  405 tggttgatgttttgatctaataattctcatagttttgttatgtatgttttttcccaattcctatatttttctgagcaaattcatgttactgcccatttat 504  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37787811 tggttgatgttttgatctaataattctcatagttttgttatgtatg-tttttcccaattcctatatttttctgagcaaattcatgttactgcccatttat 37787713  T
Q  505 ctatttttagcaacttagtactagtgtccagttgacatgtggttgggtgttctgttctctttcgttctgccactatcttgtccttttctttcttcctttc 604  Q
    |||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||    
T  37787712 ctatttttagcaacttagtactagtgtccagttgacatgtggttggg-----tgttctctttcgttctgccactatcttgtccttttctttcttcctttc 37787618  T
Q  605 tttgtgttgcaaatatcctaggtaatctatattattttcctactaaaagatggcgtataaggaaaccaattaatggtagggtgc 688  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||    
T  37787617 tttgtgttgcaaatatcctaggtaatctatattattttcctactaaaagatggcttataaggaaatcaattaatggtaaggtgc 37787534  T

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