View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5082-Insertion-7 (Length: 509)
Name: NF5082-Insertion-7
Description: NF5082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5082-Insertion-7 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 452; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 7 - 509
Target Start/End: Complemental strand, 31947781 - 31947276
Alignment:
| Q |
7 |
acctgcaaagtatcaaagtctgagctttgatagcatgtaggcctgaattagcatacgctgaagcagatttaagcatctttagtttccacaaaagtgtttc |
106 |
Q |
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| T |
31947781 |
acctgcaaagtatcaaagtctgagctttgatagcatgtaggcctgaattagcatacgctgaagcagatttaagcatctttagtttccacaaaagtgtttc |
31947682 |
T |
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| Q |
107 |
ttttggtaatatgtctgcaagaacctgagaattcaatcaacaatagattttcaatattgaaagtaaatgaagtgaaagctgaaatgagcaacaacaagcc |
206 |
Q |
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| T |
31947681 |
ttttggtaatatgtctgcaagaacctgagaattcaatcaacaatagattttcaatattgaaagtaaatgaagtgaaagctgaaatgagcaacaacaagcc |
31947582 |
T |
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| Q |
207 |
agagcaaagaaaacgcagtcatatatgcttaaatttattcggaaaaatgcagt------ctcaactttattctgaaatatgctttaaccactgtcaatgt |
300 |
Q |
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| T |
31947581 |
agagcaaagaaaatgcagtcatatatgcttaaatttattcgcaaaaatgcagtcatttgcttaactttattctgaaatatgctttaaccactgtcaattt |
31947482 |
T |
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| Q |
301 |
cattaagtcattattactcacacaacatgcttcacatattcaaagcataaagaaaaaagtcacacgcagctcttccaattgaaattctttaagtttttaa |
400 |
Q |
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| T |
31947481 |
cattaagtcattattactcacacaacatgcttcacatattcaaagcataaagaaaaaagtcacacacagctcttccaattgaaattctttaagtttttaa |
31947382 |
T |
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| Q |
401 |
taaaaacaataaaagaaccttacaggaagagatgatgagaaagtggtaaaatcctctatcggttctcctgctgctgcatttagtaaaggaagtcctttca |
500 |
Q |
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| T |
31947381 |
taaaaacaataaaagaaccttacaggaagagatgatgagaaagtggtaaaatcctctatcggttctc---ctgctgcatttagtaaaggaagtcctttca |
31947285 |
T |
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| Q |
501 |
cagcgttgt |
509 |
Q |
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| T |
31947284 |
cagcgttgt |
31947276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 10 - 157
Target Start/End: Complemental strand, 31962570 - 31962423
Alignment:
| Q |
10 |
tgcaaagtatcaaagtctgagctttgatagcatgtaggcctgaattagcatacgctgaagcagatttaagcatctttagtttccacaaaagtgtttcttt |
109 |
Q |
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| T |
31962570 |
tgcaaagtatcaaagtctgagctttgatagcatatagtcgtgaattagcatacactgaagcagacttaagcatctttagtttccacagaagtgtttcttt |
31962471 |
T |
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| Q |
110 |
tggtaatatgtctgcaagaacctgagaattcaatcaacaatagatttt |
157 |
Q |
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| T |
31962470 |
cggtaatatgtctgcaagaacctgagaattcaattaacaatagatttt |
31962423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 15 - 208
Target Start/End: Complemental strand, 31973112 - 31972922
Alignment:
| Q |
15 |
agtatcaaagtctgagctttgatagcatgtaggcctgaattagcatacgctgaagcagatttaagcatctttagtttccacaaaagtgtttcttttggta |
114 |
Q |
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| T |
31973112 |
agtatcaaagtttgagctttgatagcataaagacgtgaattggcatattcagatgctgacttagacatctttagtttccagagaagtgtttcttttggta |
31973013 |
T |
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| Q |
115 |
atatgtctgcaagaacctgagaattcaatcaacaatagattttcaatattgaaagtaaatgaagtgaaagctgaaatgagcaacaacaagccag |
208 |
Q |
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| T |
31973012 |
atatgtctgcaagaacctgtgaattcaatcaac---agattttcaatattgaaaataaatgaagtgaaagttcaaataagcaccaataagccag |
31972922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 360 - 457
Target Start/End: Complemental strand, 31962417 - 31962321
Alignment:
| Q |
360 |
tcacacgcagctcttccaattgaaattctttaagttttt-aataaaaacaataaaagaaccttacaggaagagatgatgagaaagtggtaaaatcctct |
457 |
Q |
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| T |
31962417 |
tcacacacagctcttccaattgaaatt--ttatttttttgaataaaaataataataaaaccttacaggaatagatgatgagaaagtaataaaatcctct |
31962321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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