View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5082-Insertion-8 (Length: 196)
Name: NF5082-Insertion-8
Description: NF5082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5082-Insertion-8 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-103
Query Start/End: Original strand, 8 - 196
Target Start/End: Complemental strand, 5681721 - 5681533
Alignment:
| Q |
8 |
ccgacatattcccatgttgttgtagattttcttcatcttcttgttgatctttgaacaacaattcaggaaaattaaggtttgcagaaggacctctaagata |
107 |
Q |
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| T |
5681721 |
ccgacatattcccatgttgttgtagattttcttcatcttcttgttgatctttgaacaacaattcaggaaaattaaggtttgcagaaggacctctaagata |
5681622 |
T |
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| Q |
108 |
aaacacagcagtatcataagcacgtgcagcagcaataggtgttatgtaagaacctaaccaaattcttgatcttttgtttggttctctaa |
196 |
Q |
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| T |
5681621 |
aaacacagcagtatcataagcacgtgcagcagcaataggtgttatgtaagaacctaaccaaattcttgatcttttgtttggttctctaa |
5681533 |
T |
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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 194
Target Start/End: Original strand, 47038429 - 47038472
Alignment:
| Q |
151 |
atgtaagaacctaaccaaattcttgatcttttgtttggttctct |
194 |
Q |
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| T |
47038429 |
atgtaagaacctaaccatattcttgatcttttatttggttctct |
47038472 |
T |
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