View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5082-Insertion-9 (Length: 140)
Name: NF5082-Insertion-9
Description: NF5082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5082-Insertion-9 |
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| [»] chr2 (8 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 83; Significance: 1e-39; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 6 - 140
Target Start/End: Complemental strand, 15493760 - 15493626
Alignment:
| Q |
6 |
caactactgtaccaggcggtaccaatgacacaggaaaaccaaactacttgaagaaaccatcattcttggtgtttgcaatatcagatgcacttgcattcat |
105 |
Q |
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| T |
15493760 |
caactactttaccaggtggtaccgatgacacaggaaaaccaaactacttgaagaaaccatcattcttggtgtttgcaatatcagacacatttgcatttat |
15493661 |
T |
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| Q |
106 |
ctcatcttcgacaacgttgttgattttcttgtcta |
140 |
Q |
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| T |
15493660 |
ctcagcttcgaccgcgatattgatattcttgtcta |
15493626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 6e-35
Query Start/End: Original strand, 6 - 140
Target Start/End: Complemental strand, 15645500 - 15645366
Alignment:
| Q |
6 |
caactactgtaccaggcggtaccaatgacacaggaaaaccaaactacttgaagaaaccatcattcttggtgtttgcaatatcagatgcacttgcattcat |
105 |
Q |
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| T |
15645500 |
caactactttaccaggcggtaccgatgactctggaaaaccacactatttgaataaaacatcattcttggtgtttgcaatatcagatgcatctgcattcat |
15645401 |
T |
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| Q |
106 |
ctcatcttcgacaacgttgttgattttcttgtcta |
140 |
Q |
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| T |
15645400 |
ctcatctgcgactgcgatattgattttcttgtcta |
15645366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 75; E-Value: 6e-35
Query Start/End: Original strand, 6 - 140
Target Start/End: Complemental strand, 15654552 - 15654418
Alignment:
| Q |
6 |
caactactgtaccaggcggtaccaatgacacaggaaaaccaaactacttgaagaaaccatcattcttggtgtttgcaatatcagatgcacttgcattcat |
105 |
Q |
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| T |
15654552 |
caactactttaccaggcggtaccgatgactctggaaaaccacactatttgaataaaacatcattcttggtgtttgcaatatcagatgcatctgcattcat |
15654453 |
T |
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| Q |
106 |
ctcatcttcgacaacgttgttgattttcttgtcta |
140 |
Q |
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| T |
15654452 |
ctcatctgcgactgcgatattgattttcttgtcta |
15654418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 6 - 138
Target Start/End: Complemental strand, 15624875 - 15624743
Alignment:
| Q |
6 |
caactactgtaccaggcggtaccaatgacacaggaaaaccaaactacttgaagaaaccatcattcttggtgtttgcaatatcagatgcacttgcattcat |
105 |
Q |
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| T |
15624875 |
caactactttaccaggcggtaccgatgattctggaaaaccacactatttgaataaaacatcattcttggtgtttgcaatatcagatgcatttgcattcat |
15624776 |
T |
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| Q |
106 |
ctcatcttcgacaacgttgttgattttcttgtc |
138 |
Q |
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| T |
15624775 |
ctcatctgcgaccgcgatattgattttcttgtc |
15624743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 63; E-Value: 9e-28
Query Start/End: Original strand, 10 - 140
Target Start/End: Complemental strand, 15517582 - 15517452
Alignment:
| Q |
10 |
tactgtaccaggcggtaccaatgacacaggaaaaccaaactacttgaagaaaccatcattcttggtgtttgcaatatcagatgcacttgcattcatctca |
109 |
Q |
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| T |
15517582 |
tactttaccaggtggtatcgataacacaggaaaaccaaactttttgaagaaaccatcatttttggggtttgcaatatcagatgcatctgcgttcatttca |
15517483 |
T |
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| Q |
110 |
tcttcgacaacgttgttgattttcttgtcta |
140 |
Q |
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| T |
15517482 |
tcttcgacagccatattgattttcttgtcta |
15517452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 10 - 140
Target Start/End: Complemental strand, 15534095 - 15533965
Alignment:
| Q |
10 |
tactgtaccaggcggtaccaatgacacaggaaaaccaaactacttgaagaaaccatcattcttggtgtttgcaatatcagatgcacttgcattcatctca |
109 |
Q |
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| T |
15534095 |
tactttaccaggtggtaccgatgacaccggaaaaccaaactagttgacgaaaacaccattcttggtatttgcaacatcagatgcatctgcattcatttca |
15533996 |
T |
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| Q |
110 |
tcttcgacaacgttgttgattttcttgtcta |
140 |
Q |
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| T |
15533995 |
tcttcgaccgccatattgattttcttgtcta |
15533965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 55; E-Value: 5e-23
Query Start/End: Original strand, 6 - 80
Target Start/End: Complemental strand, 15601283 - 15601209
Alignment:
| Q |
6 |
caactactgtaccaggcggtaccaatgacacaggaaaaccaaactacttgaagaaaccatcattcttggtgtttg |
80 |
Q |
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| T |
15601283 |
caactactgtaccaggcggtatcgatgacacaggaaaaccaaattatttgaagaaaccatcatttttggtgtttg |
15601209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 53; E-Value: 8e-22
Query Start/End: Original strand, 76 - 140
Target Start/End: Complemental strand, 15592012 - 15591948
Alignment:
| Q |
76 |
gtttgcaatatcagatgcacttgcattcatctcatcttcgacaacgttgttgattttcttgtcta |
140 |
Q |
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| T |
15592012 |
gtttgcaatatcagatgcacttgcatttatctcatcttcgacaacattgttgatattcttgtcta |
15591948 |
T |
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