View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5082_high_10 (Length: 458)
Name: NF5082_high_10
Description: NF5082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5082_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 11 - 444
Target Start/End: Complemental strand, 46338397 - 46337964
Alignment:
| Q |
11 |
cacagatgaaagctactattaatcaagctgatgaacccgatgctgctgaggctatgccaccgcctaattccgtatgtatcttctcaaacccttactttca |
110 |
Q |
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| T |
46338397 |
cacaaatgaaagctactattaatcaagctgatgaactcgatgctgctgaggctatgccaccgcctaattccgtatgtatcttctcaaacccttactttca |
46338298 |
T |
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| Q |
111 |
tcaattcaatttcattcttcgacctcaattgcattacacctcatgctgctatgttgtttgtttcgttgcagaaaagggtcagggtcaaaaaagaactaac |
210 |
Q |
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| T |
46338297 |
tcaattcaatttcattcttcgacctcaattgcattacacctcatgctgctatgttgtttctttcgttgcagaaaagggtcagggtcaaaaaagaactaac |
46338198 |
T |
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| Q |
211 |
ttttcaagatatgtatcaaaaccaagacttgtttgatcaggatgatgatgaggacgatgattgggacccttctcagaagcaagctgatgatggagttgct |
310 |
Q |
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| T |
46338197 |
ttttcaagatatgtatcaaaaccaagacttgtttgatcaggatgatgatgaggacgatgattgggacccttctcagaagcaagctgatgatggagttgct |
46338098 |
T |
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| Q |
311 |
cagactgctgtttccgattccatccatgaagtttcagaagtcaatccacagcttaatgctgtaagcgtcttctcaaattattgttcatttgtctatttca |
410 |
Q |
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| T |
46338097 |
cagactgctgtttccgattccatccatgaagtttcagaagccaatccacagcctaatgctgtaagcttcttctcaaattattgttcatttgtctatttca |
46337998 |
T |
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| Q |
411 |
tttcaatgtgtgattgagaccaaggtttaaactg |
444 |
Q |
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| T |
46337997 |
tttcaatgtgtgattgagaccaaggtttaaactg |
46337964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 164 - 279
Target Start/End: Complemental strand, 46337797 - 46337682
Alignment:
| Q |
164 |
ttgtttgtttcgttgcagaaaagggtcagggtcaaaaaagaactaacttttcaagatatgtatcaaaaccaagacttgtttgatcaggatgatgatgagg |
263 |
Q |
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|||||||||| ||||||||||||| | ||| |||| |||||||||||||| || ||||||||| |||||| |||||||| |||||||||| |||| |
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| T |
46337797 |
ttgtttgtttgactgcagaaaagggttaaggtgcaaaaggaactaacttttcaggacctgtatcaaagccaagagttgtttgacgaggatgatgaggagg |
46337698 |
T |
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| Q |
264 |
acgatgattgggaccc |
279 |
Q |
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| T |
46337697 |
acgatgattgggaccc |
46337682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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