View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5082_high_17 (Length: 398)
Name: NF5082_high_17
Description: NF5082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5082_high_17 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 36 - 398
Target Start/End: Complemental strand, 41768526 - 41768164
Alignment:
| Q |
36 |
tgtttaatttctgtttgattattgcgtaatgtttatgttactgcaatcataggccaaacgacttcgttttggnnnnnnntatcccttttcttattttann |
135 |
Q |
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| T |
41768526 |
tgtttaatttctgtttgattattgcgtaatgtttatgttactgcaatcacaggccaaacgacttcgttttggaaaaaaatatcccttttcttattttatt |
41768427 |
T |
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| Q |
136 |
nnnnnnattattaaagtgggttggattttctaccctttattataatttaggcttgctactacattttttgatttctttctacaccccttctcctttgtaa |
235 |
Q |
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| T |
41768426 |
ttttttataattaaagtgggttggattttctaccctttattgtaagttgggcttgctactacattttttgatttctttctacaccccttctcctttgtaa |
41768327 |
T |
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| Q |
236 |
agtatctttttcttaccgtgaacgagaacatgaagtgtttaatgactagattcattgtgtaaataaataaatttgatagtgcatacatttaattatttaa |
335 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41768326 |
agtatctttttcttaccgtgaacgagaaaatgaagtgtttaatgactagatttattgtgtaaataaataaatttgatagtgcatacatttaattatttaa |
41768227 |
T |
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| Q |
336 |
tgttcaagaatgcggagaactacgacaattctacatacgaacaagtaacggcataatttatac |
398 |
Q |
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| T |
41768226 |
tgttcaagaatgcggagaactacgacaattctacatacgaacaagtaacggcataatttatac |
41768164 |
T |
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