View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5082_high_28 (Length: 313)

Name: NF5082_high_28
Description: NF5082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5082_high_28
NF5082_high_28
[»] chr2 (7 HSPs)
chr2 (1-313)||(5414975-5415287)
chr2 (132-312)||(5388562-5388742)
chr2 (132-312)||(5402371-5402551)
chr2 (121-312)||(5396660-5396851)
chr2 (127-247)||(5407992-5408112)
chr2 (263-292)||(5398805-5398834)
chr2 (199-247)||(5398750-5398798)
[»] chr8 (2 HSPs)
chr8 (212-313)||(36262476-36262577)
chr8 (200-309)||(36267625-36267734)


Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 5414975 - 5415287
Alignment:
Q  1 tttcattctctagaaggcattcattaagtttttagtcttcttttggatcattttaatttcatttatatagagcttgaaaatttgatttgaaatgacnnnn 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  5414975 tttcattctctagaaggcattcattaagtttttagtcttcttttggatcattttaatttcatttatatagagcttgaaaatttgatttgaaatgacaaaa 5415074  T
Q  101 nnntttacttttgttggatattgaaaatagctggtagcagaagtggtgggaacatacatgatgatatttgctggttgtgctgctgttattgtgaatctta 200  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  5415075 aaatttacttttgttggatattgaaaatagctggtagcagaagtggtgggaacatacatgatgatatttgcgggttgtgctgctgttattgtgaatctta 5415174  T
Q  201 acaatgatcatgtagtaacacttcctggaattgcatttgcttggggattcactgttatggttttgatttactctgttggtcacatttctggtgctcattt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5415175 acaatgatcatgtagtaacacttcctggaattgcatttgcttggggattcactgttatggttttgatttactctgttggtcacatttctggtgctcattt 5415274  T
Q  301 caaccctgctgtt 313  Q
    |||||||||||||    
T  5415275 caaccctgctgtt 5415287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 132 - 312
Target Start/End: Original strand, 5388562 - 5388742
Alignment:
Q  132 tggtagcagaagtggtgggaacatacatgatgatatttgctggttgtgctgctgttattgtgaatcttaacaatgatcatgtagtaacacttcctggaat 231  Q
    |||||||||| ||||| || || ||| |  |||||||||| || |||||||||||| | ||||||||| |||||||  | |||||||||| |||||| ||    
T  5388562 tggtagcagaggtggtagggacgtacttcttgatatttgcagggtgtgctgctgttgtggtgaatcttgacaatgacaaagtagtaacacatcctgggat 5388661  T
Q  232 tgcatttgcttggggattcactgttatggttttgatttactctgttggtcacatttctggtgctcatttcaaccctgctgt 312  Q
      || ||| ||||||  ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  5388662 ctcaattgtttggggcctcactgttatggttttggtttactctgttggtcacatctctggtgctcatttcaaccctgctgt 5388742  T

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Target: chr2; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 132 - 312
Target Start/End: Original strand, 5402371 - 5402551
Alignment:
Q  132 tggtagcagaagtggtgggaacatacatgatgatatttgctggttgtgctgctgttattgtgaatcttaacaatgatcatgtagtaacacttcctggaat 231  Q
    |||||||||| ||||| || || ||| |  |||||||||| || |||||||||||| | ||||||||| |||||||  | |||||||||| |||||| ||    
T  5402371 tggtagcagaggtggtagggacgtacttcttgatatttgcagggtgtgctgctgttgtggtgaatcttgacaatgacaaagtagtaacacatcctgggat 5402470  T
Q  232 tgcatttgcttggggattcactgttatggttttgatttactctgttggtcacatttctggtgctcatttcaaccctgctgt 312  Q
      || ||| ||||||  ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  5402471 ctcaattgtttggggcctcactgttatggttttggtttactctgttggtcacatctctggtgctcatttcaaccctgctgt 5402551  T

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Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 121 - 312
Target Start/End: Original strand, 5396660 - 5396851
Alignment:
Q  121 ttgaaaatagctggtagcagaagtggtgggaacatacatgatgatatttgctggttgtgctgctgttattgtgaatcttaacaatgatcatgtagtaaca 220  Q
    ||||| |||| |||||||||||||||||||||||| | |  ||||||||||||| |||||||||||  | ||||| |||||||||||| | || || |||    
T  5396660 ttgaatatagttggtagcagaagtggtgggaacattcttcttgatatttgctggatgtgctgctgtggtggtgaaccttaacaatgataaagttgtgaca 5396759  T
Q  221 cttcctggaattgcatttgcttggggattcactgttatggttttgatttactctgttggtcacatttctggtgctcatttcaaccctgctgt 312  Q
    |||||||||||  || ||| ||||||| |  |||||||||| ||  | || ||| | ||||| || ||||||||||||||||| || |||||    
T  5396760 cttcctggaatatcaattgtttggggacttgctgttatggtattagtctattctataggtcatatctctggtgctcatttcaatcccgctgt 5396851  T

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Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 127 - 247
Target Start/End: Complemental strand, 5408112 - 5407992
Alignment:
Q  127 atagctggtagcagaagtggtgggaacatacatgatgatatttgctggttgtgctgctgttattgtgaatcttaacaatgatcatgtagtaacacttcct 226  Q
    |||| ||||||||||||||||| |||||| | |  ||||||||||||| |||| | ||||  | ||||| |||||||||||| | || || |||||||||    
T  5408112 atagttggtagcagaagtggtgcgaacattcttcttgatatttgctggatgtggttctgtggtggtgaaccttaacaatgataaagttgtgacacttcct 5408013  T
Q  227 ggaattgcatttgcttgggga 247  Q
    ||||||||| ||| |||||||    
T  5408012 ggaattgcaattgtttgggga 5407992  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 292
Target Start/End: Original strand, 5398805 - 5398834
Alignment:
Q  263 ttgatttactctgttggtcacatttctggt 292  Q
    ||||||||||||||||||||||||||||||    
T  5398805 ttgatttactctgttggtcacatttctggt 5398834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 5398750 - 5398798
Alignment:
Q  199 taacaatgatcatgtagtaacacttcctggaattgcatttgcttgggga 247  Q
    ||||||||||| |||||| ||||||| ||||||||||||| | ||||||    
T  5398750 taacaatgatcgtgtagtgacacttcttggaattgcatttacatgggga 5398798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 212 - 313
Target Start/End: Original strand, 36262476 - 36262577
Alignment:
Q  212 gtagtaacacttcctggaattgcatttgcttggggattcactgttatggttttgatttactctgttggtcacatttctggtgctcatttcaaccctgctg 311  Q
    |||||||||||||| || |||||| ||| ||||||| | ||| |  |||| |||||||||||| ||||||| || ||||||||||||||||| |||||||    
T  36262476 gtagtaacacttccagggattgcaattgtttggggactaactttgttggtattgatttactctcttggtcatatctctggtgctcatttcaatcctgctg 36262575  T
Q  312 tt 313  Q
    ||    
T  36262576 tt 36262577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 200 - 309
Target Start/End: Original strand, 36267625 - 36267734
Alignment:
Q  200 aacaatgatcatgtagtaacacttcctggaattgcatttgcttggggattcactgttatggttttgatttactctgttggtcacatttctggtgctcatt 299  Q
    ||||||||  |||| |||||||||||||||||| || ||| ||||||| |  |||| |||||  || |||||||| |||||||||| |||||||||||||    
T  36267625 aacaatgaaaatgttgtaacacttcctggaatttcaattgtttggggacttgctgtgatggtgctggtttactctcttggtcacatctctggtgctcatt 36267724  T
Q  300 tcaaccctgc 309  Q
    |||| |||||    
T  36267725 tcaatcctgc 36267734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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