View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5082_high_4 (Length: 499)

Name: NF5082_high_4
Description: NF5082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5082_high_4
NF5082_high_4
[»] chr7 (1 HSPs)
chr7 (9-484)||(28521398-28521865)
[»] chr8 (5 HSPs)
chr8 (52-188)||(12726438-12726574)
chr8 (42-167)||(34293669-34293794)
chr8 (386-483)||(12726090-12726187)
chr8 (363-480)||(34294229-34294346)
chr8 (70-140)||(9506730-9506800)
[»] chr1 (2 HSPs)
chr1 (74-140)||(18214692-18214758)
chr1 (74-140)||(139462-139528)
[»] chr2 (1 HSPs)
chr2 (79-140)||(29560925-29560986)
[»] chr6 (2 HSPs)
chr6 (79-147)||(19823499-19823567)
chr6 (79-147)||(19888588-19888656)


Alignment Details
Target: chr7 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 9 - 484
Target Start/End: Original strand, 28521398 - 28521865
Alignment:
Q  9 ttatactcttaggaaatcactcactggtttggcaggggatacacaattttcagaattttcaataatatccggaacttccatggcatgtcctcatgtcgct 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28521398 ttatactcttaggaaatcactcactggtttggcaggggatacacaattttcagaattttcaataatatccggaacttccatggcatgtcctcatgtcgct 28521497  T
Q  109 ggtgtagcagcatatgtgaagtcatttcatcccaattggagtcctgctgcaatcagatctgcaattatcaccactggtgagattattgttgctaaataac 208  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28521498 ggtgtagcagcatatgtgaagtcatttcatcccaaatggactcctgctgcaatcagatctgcaattatcaccactggtgagattattgttgctaaataac 28521597  T
Q  209 taaatatcacnnnnnnnaatcttgtacaaattgatccaaagcttatttacacttgtgttagttgaattattcatgtcataaactaaaaaattcacaattt 308  Q
    ||||||| ||       ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||        |||||||||    
T  28521598 taaatattactttttttaatcttgtacaaattgatccaaagcttatttacacttgtgttagttgaattgttcatgtcataaac--------tcacaattt 28521689  T
Q  309 gacatgactaacttgtttacaatctttatgaagccaaacctatgagcaaaagaattaacaatgaagcagaatttgcctttggttctggtcaactaaaccc 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28521690 gacatgactaacttgtttacaatctttatgaagccaaacctatgagcaaaagaattaacaatgaagcagaatttgcctttggttctggtcaactaaaccc 28521789  T
Q  409 aacaagagctgtgagtcctggtttaatctacgacatggacgaccttggctatatccaattcctatgccatgaaggt 484  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28521790 aacaagagctgtgagtcctggtttaatctacgacatggacgaccttggctatatccaattcctatgccatgaaggt 28521865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 52 - 188
Target Start/End: Complemental strand, 12726574 - 12726438
Alignment:
Q  52 caattttcagaattttcaataatatccggaacttccatggcatgtcctcatgtcgctggtgtagcagcatatgtgaagtcatttcatcccaattggagtc 151  Q
    ||||||||||||||| || | || ||||| || || ||| |||| ||||||||  |||| |||||||||||||||||||||||||| ||  |||||| ||    
T  12726574 caattttcagaatttacactgatgtccggtacatcaatgtcatgccctcatgtttctggagtagcagcatatgtgaagtcatttcacccagattggactc 12726475  T
Q  152 ctgctgcaatcagatctgcaattatcaccactggtga 188  Q
    |||| ||||||||||| ||||| || ||||| |||||    
T  12726474 ctgccgcaatcagatcagcaataattaccacaggtga 12726438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 42 - 167
Target Start/End: Original strand, 34293669 - 34293794
Alignment:
Q  42 aggggatacacaattttcagaattttcaataatatccggaacttccatggcatgtcctcatgtcgctggtgtagcagcatatgtgaagtcatttcatccc 141  Q
    |||||| || |||||||||| |||| || |||| || || |||||||||||||| |||||  |  ||||  ||||||||||||||||||||||||| ||     
T  34293669 aggggacactcaattttcagtatttacactaatgtctggcacttccatggcatgccctcacatttctggaatagcagcatatgtgaagtcatttcaccca 34293768  T
Q  142 aattggagtcctgctgcaatcagatc 167  Q
    |||||||  |||||||||||||||||    
T  34293769 aattggacccctgctgcaatcagatc 34293794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 386 - 483
Target Start/End: Complemental strand, 12726187 - 12726090
Alignment:
Q  386 tttggttctggtcaactaaacccaacaagagctgtgagtcctggtttaatctacgacatggacgaccttggctatatccaattcctatgccatgaagg 483  Q
    |||||| |||||||| | || |||||||||||||||| |||||||||| |||| |||||||| ||| |||  ||||| || ||| |||||||||||||    
T  12726187 tttggtgctggtcaagttaatccaacaagagctgtgaatcctggtttagtctatgacatggatgactttgcttatattcagttcttatgccatgaagg 12726090  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 363 - 480
Target Start/End: Original strand, 34294229 - 34294346
Alignment:
Q  363 ttaacaatgaagcagaatttgcctttggttctggtcaactaaacccaacaagagctgtgagtcctggtttaatctacgacatggacgaccttggctatat 462  Q
    ||||||| || || || ||||| |||||| | |||| | | ||||||||||||||| ||| ||||||||||||||| |||||||| ||  |||| ||| |    
T  34294229 ttaacaaggaggctgagtttgcatttggtgccggtctagttaacccaacaagagctttgaatcctggtttaatctatgacatggatgaatttggttatgt 34294328  T
Q  463 ccaattcctatgccatga 480  Q
    ||| ||| ||||||||||    
T  34294329 ccagttcttatgccatga 34294346  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 140
Target Start/End: Original strand, 9506730 - 9506800
Alignment:
Q  70 ataatatccggaacttccatggcatgtcctcatgtcgctggtgtagcagcatatgtgaagtcatttcatcc 140  Q
    |||| ||| ||||| || |||||||||||||| || ||||| || || ||||||||||| |||||||||||    
T  9506730 ataaaatctggaacctctatggcatgtcctcacgttgctggagttgctgcatatgtgaaatcatttcatcc 9506800  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 74 - 140
Target Start/End: Original strand, 18214692 - 18214758
Alignment:
Q  74 tatccggaacttccatggcatgtcctcatgtcgctggtgtagcagcatatgtgaagtcatttcatcc 140  Q
    |||||||||| || |||||||| |||||||| ||||| || |  |||||||||||||||||||||||    
T  18214692 tatccggaacctctatggcatgccctcatgttgctggagttgttgcatatgtgaagtcatttcatcc 18214758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 140
Target Start/End: Complemental strand, 139528 - 139462
Alignment:
Q  74 tatccggaacttccatggcatgtcctcatgtcgctggtgtagcagcatatgtgaagtcatttcatcc 140  Q
    |||| ||||| || |||||||| ||||||| |||||| || || ||||||||||| |||||||||||    
T  139528 tatctggaacctctatggcatgccctcatgccgctggagttgctgcatatgtgaaatcatttcatcc 139462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 140
Target Start/End: Original strand, 29560925 - 29560986
Alignment:
Q  79 ggaacttccatggcatgtcctcatgtcgctggtgtagcagcatatgtgaagtcatttcatcc 140  Q
    |||||||| ||| ||||||||||||| |||||| | |  ||||||||||| |||||||||||    
T  29560925 ggaacttctatgtcatgtcctcatgttgctggtattgttgcatatgtgaaatcatttcatcc 29560986  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 79 - 147
Target Start/End: Original strand, 19823499 - 19823567
Alignment:
Q  79 ggaacttccatggcatgtcctcatgtcgctggtgtagcagcatatgtgaagtcatttcatcccaattgg 147  Q
    ||||| || ||||||||||| ||||| ||||| || |  ||||||||||| ||||||||||| ||||||    
T  19823499 ggaacctctatggcatgtccccatgttgctggagttgttgcatatgtgaaatcatttcatccaaattgg 19823567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 79 - 147
Target Start/End: Original strand, 19888588 - 19888656
Alignment:
Q  79 ggaacttccatggcatgtcctcatgtcgctggtgtagcagcatatgtgaagtcatttcatcccaattgg 147  Q
    ||||| || ||| ||||||| ||||| ||||| || || ||||||||||| ||||||||||| ||||||    
T  19888588 ggaacctctatgtcatgtccgcatgttgctggagttgctgcatatgtgaaatcatttcatccaaattgg 19888656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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