View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5082_high_40 (Length: 255)
Name: NF5082_high_40
Description: NF5082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5082_high_40 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 31550912 - 31550690
Alignment:
| Q |
19 |
agtttactcacaagtggacatgtattattgtaaactggacagtatttaaacacaacttataaccttaaatttgaataacagaaaggtactgcaatcggat |
118 |
Q |
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| T |
31550912 |
agtttactcacaagtggacatgtattattgtaaactggacagtatttaaacacaacttataaccttaaatttgaataacagaaaggtactgcaatcggat |
31550813 |
T |
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| Q |
119 |
gtgtatgcagaattgaccgaattctgtgatcaaatctcgtgttccctgtctgcatttttcgtatatatttacttttgaaccagggtttctgttctaacag |
218 |
Q |
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| T |
31550812 |
gtgtatgcagaattgaccgaattctgtgatcaaatctcgtgttctctgtctgcatttttcgtatatatttacttttgaaccagggtttctgttctaacag |
31550713 |
T |
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| Q |
219 |
atttacatgatgcatagtattat |
241 |
Q |
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| T |
31550712 |
atttacatgatgcatagtattat |
31550690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 218
Target Start/End: Complemental strand, 23033426 - 23033384
Alignment:
| Q |
176 |
ttcgtatatatttacttttgaaccagggtttctgttctaacag |
218 |
Q |
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| T |
23033426 |
ttcgtatctattttattttgaaccagggtttctgttctaacag |
23033384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 34411223 - 34411173
Alignment:
| Q |
165 |
tgtctgcatttttcgtatatatttacttttgaaccagggtttctgttctaa |
215 |
Q |
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| T |
34411223 |
tgtctgcgtttttcgtatatgtttacttttgaaccaggtttgctgatctaa |
34411173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 33717256 - 33717198
Alignment:
| Q |
157 |
gtgttccctgtctgcatttttcgtatatatttacttttgaaccagggtttctgttctaa |
215 |
Q |
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|||||| |||| |||||||||||||| | ||||||||||||| |||||| |||||||| |
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| T |
33717256 |
gtgttctctgtttgcatttttcgtatctgtttacttttgaactagggttgttgttctaa |
33717198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 217
Target Start/End: Original strand, 1498033 - 1498078
Alignment:
| Q |
172 |
atttttcgtatatatttacttttgaaccagggtttctgttctaaca |
217 |
Q |
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||||||||||| | ||| |||||||||||||||| ||||||||||| |
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| T |
1498033 |
atttttcgtatctgttttcttttgaaccagggttactgttctaaca |
1498078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 6263005 - 6263066
Alignment:
| Q |
157 |
gtgttccctgtctgcatttttcgtatatatttacttttgaaccagggtttctgttctaacag |
218 |
Q |
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|||||| |||| ||| |||||||||| ||||| ||||||||||||| || ||||||||||| |
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| T |
6263005 |
gtgttctctgtttgcgtttttcgtatctattttcttttgaaccaggattgttgttctaacag |
6263066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 217
Target Start/End: Original strand, 5055885 - 5055929
Alignment:
| Q |
173 |
tttttcgtatatatttacttttgaaccagggtttctgttctaaca |
217 |
Q |
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|||||||||| | |||||||||||||||||||| |||||||||| |
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| T |
5055885 |
tttttcgtatctttttacttttgaaccagggttgttgttctaaca |
5055929 |
T |
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