View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5082_high_41 (Length: 255)
Name: NF5082_high_41
Description: NF5082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5082_high_41 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 43416338 - 43416584
Alignment:
| Q |
1 |
ttcttctaaagaaaagcaaaagtcgacggttcttagcttcccaattgcatggccaattacatgcaacacctcctcaagtgctacattcttgaatannnnn |
100 |
Q |
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| T |
43416338 |
ttcttctaaagaaaagcaaaagtcgacggttcttagcttcccaattgcatggccaattacatgcaacacctcctcaagtgctacattcttgaatattttt |
43416437 |
T |
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| Q |
101 |
nnactctagaaactgtagtaagatatagtgcacatagaataacaaacaggggaataatcattcatgtaaccaaaagaggaaagaaaaataagagggaaaa |
200 |
Q |
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| T |
43416438 |
ttactctagaaactgtagtaagatatagtgcacatagaataacaaacaggggaataaccattcatgtaaccaaaagaggaaagaaaaataagagggaaaa |
43416537 |
T |
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| Q |
201 |
ctttcaatgattgacataaaatttttgtattgcatctctgtggtcct |
247 |
Q |
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| T |
43416538 |
ctttcaatgattgacataaaatttttgtattgcatctcagtggtcct |
43416584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 103 - 247
Target Start/End: Original strand, 43401755 - 43401901
Alignment:
| Q |
103 |
actctagaaactgtagtaagatatagtgcacatagaataacaaacaggggaataatcattcatgtaaccaaaagagg--aaagaaaaataagagggaaaa |
200 |
Q |
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|||||| ||||| ||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||| ||| ||||||||||||| |
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| T |
43401755 |
actctataaactatagtaagatatggtgcacatagaataacaaagaggggaataatcaatcatgtaaccaaaagagggaaaaaaaatataagagggaaaa |
43401854 |
T |
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| Q |
201 |
ctttcaatgattgacataaaatttttgtattgcatctctgtggtcct |
247 |
Q |
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| T |
43401855 |
ttttcaatgattgacataagaattttgcactgcatcttggtggtcct |
43401901 |
T |
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