View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5082_high_43 (Length: 249)
Name: NF5082_high_43
Description: NF5082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5082_high_43 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 39877161 - 39876943
Alignment:
| Q |
1 |
caatttttcccctgactctggttcttttcaggactcatgacttatttccgagaggcaactgtacacactcaagagctgttggatttgcttgttaaatgtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39877161 |
caatttttcccctgactctggttcttttcaggactcatgacttatttccgagaggcaactgtacacactcaagagctgttggatttgcttgttaaatgtg |
39877062 |
T |
|
| Q |
101 |
aaaataaaattcagactcgtatcaagattggactcaactcaaagatgcctagcaggtaacaatcatacaattatttagtagttcatttggaacttttagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39877061 |
aaaataaaattcagactcgtatcaagattggactcagctcaaagatgcctagcaggtaacaatcatacaattatttagtagttcatttggaacttttagt |
39876962 |
T |
|
| Q |
201 |
cccgttgatcaaatctgtg |
219 |
Q |
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||||||||||||||||||| |
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| T |
39876961 |
cccgttgatcaaatctgtg |
39876943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 44780396 - 44780201
Alignment:
| Q |
1 |
caatttttcccctgactctggttcttttcaggactcatgacttatttccgagaggcaactgtacacactcaagagctgttggatttgcttgttaaatgtg |
100 |
Q |
| |
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|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44780396 |
caattttttccctgactttggttcttttcaggactcatgacttatttccgagaggcaactgtacacactcaagagctgttggatttgcttgttaaatgtg |
44780297 |
T |
|
| Q |
101 |
aaaataaaattcagactcgtatcaagattggactcaactcaaagatgcctagcaggtaacaatcatacaattatttagtagttcatttggaacttt |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
44780296 |
aaaataaaattcagactcgtatcaagattggactcaactcaaagatgcctagcaggtaacaatcatacaattatttagtagttcatttggagcttt |
44780201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 30 - 155
Target Start/End: Original strand, 2898760 - 2898885
Alignment:
| Q |
30 |
aggactcatgacttatttccgagaggcaactgtacacactcaagagctgttggatttgcttgttaaatgtgaaaataaaattcagactcgtatcaagatt |
129 |
Q |
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||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
2898760 |
aggactcatgacttacttccgagaggcaactgtacatactcaagagttgttggatttgcttgtcaaatgtgaaaataaaattcagacccgtatcaagata |
2898859 |
T |
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| Q |
130 |
ggactcaactcaaagatgcctagcag |
155 |
Q |
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|||||||||||||||||||||||||| |
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| T |
2898860 |
ggactcaactcaaagatgcctagcag |
2898885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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