View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5082_high_47 (Length: 246)
Name: NF5082_high_47
Description: NF5082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5082_high_47 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 19 - 230
Target Start/End: Original strand, 37007803 - 37008014
Alignment:
| Q |
19 |
tgaatgagtttaaagtgttaaaggaccacggtttattaggactaccattaccacaattggggtatacatatcaactgtttattgggactaattttctctt |
118 |
Q |
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|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
37007803 |
tgaatgagtttaaagtgttaaaggactacgatttattaggactaccattaccacaattggggtagacatatcaactgtttattgggattaattttctctt |
37007902 |
T |
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| Q |
119 |
atactttaacagaggtgcatcctgaagcaaaccaattataggatggtcttgccaaacttgggcttaatttgtctcccataattagaattttatatgtggc |
218 |
Q |
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||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
37007903 |
atactttaacagaggtgcatcctgaagcaaaccaagtatacgatggtcttgccaaacttgggcttagtttgtctcccataattagaattttatatgtggc |
37008002 |
T |
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| Q |
219 |
tccaggtttcat |
230 |
Q |
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|||||||||||| |
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| T |
37008003 |
tccaggtttcat |
37008014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 36991691 - 36991894
Alignment:
| Q |
18 |
atgaatgagtttaaagtgttaaaggaccacggtttattagg-actaccattaccacaattggggtatacatatcaactgtttattgggactaattttctc |
116 |
Q |
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||||||||| |||||||||||||||||| | ||| | ||| ||||||||| ||||||| || || ||| || || | |||||| ||||| | | || |
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| T |
36991691 |
atgaatgagcttaaagtgttaaaggaccgtgatttttaagggactaccattgtcacaatttggttaaacaaattaattatttattaagactattatcctt |
36991790 |
T |
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| Q |
117 |
ttatactttaacagaggtgcatcctgaagcaaaccaattataggatggtcttgccaaacttgggcttaatttgtctcccataattagaattttatatgtg |
216 |
Q |
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|||||||||||| |||||||||||| ||| ||||||| || ||||||||||||||||||| |||| |||||||| || |||||||| |||||||||| |
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| T |
36991791 |
ttatactttaactgaggtgcatcctaaagaaaaccaagattacgatggtcttgccaaacttgaacttagtttgtctctcaaaattagaaatttatatgtg |
36991890 |
T |
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| Q |
217 |
gctc |
220 |
Q |
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|||| |
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| T |
36991891 |
gctc |
36991894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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