View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5082_high_62 (Length: 215)
Name: NF5082_high_62
Description: NF5082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5082_high_62 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 16 - 215
Target Start/End: Complemental strand, 19089216 - 19089017
Alignment:
| Q |
16 |
catttcatatctcattcaatataaaattctcaaatgcgttcactataggaccgagattccttgttgtcactaattgtacgcactcacacatttagtaact |
115 |
Q |
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| T |
19089216 |
catttcatatctcatttaatataaaattctcaaatgcgttcactataggaccgagattccttgttatcactaattgtacgcactcacacatttagtaact |
19089117 |
T |
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| Q |
116 |
acatcactatttgatcgaaatcaaacagttcatatctcgggcacagtaattttaatttttaaagaaaatcaaaatctgtttgatatttgaactacccaat |
215 |
Q |
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| T |
19089116 |
acgtcactatttgatcgaaatcaaacggttcatatttcgggcacagtaattttaatttttaaagaaaatcaaaatctgtttgatatttgaactacccaat |
19089017 |
T |
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Target: chr4 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 25048336 - 25048374
Alignment:
| Q |
160 |
agtaattttaatttttaaagaaaatcaaaatctgtttga |
198 |
Q |
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| T |
25048336 |
agtaattttaatttttaaagaaaatcaaaatttgtttga |
25048374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 14126854 - 14126906
Alignment:
| Q |
162 |
taattttaatttttaaagaaaatcaaaatctgtttgatatttgaactacccaa |
214 |
Q |
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| T |
14126854 |
taattttaatttcaaaagaaaatcaaaatatgtttgaagtttgaaccacccaa |
14126906 |
T |
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