View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5082_high_65 (Length: 204)

Name: NF5082_high_65
Description: NF5082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5082_high_65
NF5082_high_65
[»] chr4 (1 HSPs)
chr4 (39-189)||(8647712-8647862)
[»] chr8 (2 HSPs)
chr8 (17-188)||(19722010-19722179)
chr8 (32-116)||(4491224-4491308)
[»] chr3 (1 HSPs)
chr3 (30-188)||(29312530-29312684)
[»] chr2 (1 HSPs)
chr2 (35-188)||(12288498-12288648)
[»] chr5 (3 HSPs)
chr5 (29-186)||(3632427-3632580)
chr5 (17-74)||(2976740-2976798)
chr5 (78-170)||(4870713-4870802)
[»] chr1 (1 HSPs)
chr1 (32-109)||(37035912-37035989)


Alignment Details
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 39 - 189
Target Start/End: Complemental strand, 8647862 - 8647712
Alignment:
Q  39 ccatgagtgaatgttcaactcctggaagaacgcaataccattgtaccccaaggatctccaaatacaagcataaagaggcaatccctgaggtagtgtaaag 138  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  8647862 ccatgagtgaatgttcaactcctggaagaacgcaataccattgtaccccaaggatctccaaatacaagcagaaagaggcaatccctgaggtagtgtaaag 8647763  T
Q  139 taaacatcttccacatgatcattacatctataacacataggagacaaaact 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8647762 taaacatcttccacatgatcattacatctataacacataggagacaaaact 8647712  T

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Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 19722179 - 19722010
Alignment:
Q  17 gagaggcggagacttttt-tgagccatgagtgaatgttcaactcctggaagaacgcaataccattgtaccccaaggatctccaaatacaagcataaaga- 114  Q
    ||||||||||||| |||| ||||||| |||||| |||| |||||||||||||| | |||| | |||||||||||||||||||||||||||||| |||||     
T  19722179 gagaggcggagaccttttctgagccacgagtgagtgtttaactcctggaagaaagaaatatcgttgtaccccaaggatctccaaatacaagcagaaagag 19722080  T
Q  115 ggcaatccctgaggtagtgtaaagtaaacatcttccacatgatcattacatctataacacataggagacaaaac 188  Q
    ||||||||| |||| | ||||    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  19722079 ggcaatcccggaggcactgta----aaacatcttccacatgatcattacatctataacacataggagacaaaac 19722010  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 116
Target Start/End: Original strand, 4491224 - 4491308
Alignment:
Q  32 ttttgagccatgagtgaatgttcaactcctggaagaacgcaataccattgtaccccaaggatctccaaatacaagcataaagagg 116  Q
    |||||||||| |||||| |||| || |||| ||| ||| ||||| ||||||||||||||||||| || |||||| ||||||||||    
T  4491224 ttttgagccacgagtgagtgtttaaatcctagaataacacaatagcattgtaccccaaggatcttcacatacaatcataaagagg 4491308  T

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Target: chr3 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 30 - 188
Target Start/End: Complemental strand, 29312684 - 29312530
Alignment:
Q  30 ttttttgagccatgagtgaatgttcaactcctggaagaacgcaataccattgtaccccaaggatctccaaatacaagcataaagaggcaa-tccctgagg 128  Q
    |||||||||||| |||||| |||| ||||| |||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||| || |||||||||    
T  29312684 ttttttgagccacgagtgagtgtttaactcatggaagaacgcaataccattgttccc-aaggatctccaaatacaagcagaaagagggaaatccctgagg 29312586  T
Q  129 tagtgtaaagtaaacatcttccacatgatcattacatctataacacataggagacaaaac 188  Q
     ||| ||||    |||||||||||||||||||||||||||||||||||||||||||||||    
T  29312585 cagtctaaa----acatcttccacatgatcattacatctataacacataggagacaaaac 29312530  T

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Target: chr2 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 35 - 188
Target Start/End: Original strand, 12288498 - 12288648
Alignment:
Q  35 tgagccatgagtgaatgttcaactcctggaagaacgcaataccattgtaccccaaggatctccaaatacaagcataaaga-ggcaatccctgaggtagtg 133  Q
    ||||||| |||||| |||| |||||||||||||| | |||| |||| |||||||| |||||||||||||||||| ||| | ||||||||| |||| ||||    
T  12288498 tgagccacgagtgagtgtttaactcctggaagaaagaaatatcattttaccccaatgatctccaaatacaagcagaaatagggcaatcccggaggcagtg 12288597  T
Q  134 taaagtaaacatcttccacatgatcattacatctataacacataggagacaaaac 188  Q
    ||    ||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  12288598 ta----aaacatcttccacatgatcattacatctatagcacacaggagacaaaac 12288648  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 29 - 186
Target Start/End: Original strand, 3632427 - 3632580
Alignment:
Q  29 cttttttgagccatgagtgaatgttcaactcctggaagaacgcaataccattgtaccccaaggatctccaaatacaagcataaaga-ggcaatccctgag 127  Q
    ||||||||||||| |||||| |||  |||||||||||||| ||| | | |||||||||||| |||||||||||||||||| | ||| | |||||||| ||    
T  3632427 cttttttgagccacgagtgagtgtgtaactcctggaagaa-gcagtgctattgtaccccaaagatctccaaatacaagcagagagatgacaatccctaag 3632525  T
Q  128 gtagtgtaaagtaaacatcttccacatgatcattacatctataacacataggagacaaa 186  Q
      |||| |    |||||| ||| |||||||||||||||||||  |||| |||| |||||    
T  3632526 acagtgca----aaacattttcaacatgatcattacatctatggcacaaaggatacaaa 3632580  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 2976798 - 2976740
Alignment:
Q  17 gagaggcggagac-ttttttgagccatgagtgaatgttcaactcctggaagaacgcaat 74  Q
    ||||||| ||||| |||||||||||| |||||| |||| | ||||||||||||||||||    
T  2976798 gagaggcagagaccttttttgagccacgagtgagtgtttagctcctggaagaacgcaat 2976740  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 170
Target Start/End: Original strand, 4870713 - 4870802
Alignment:
Q  78 attgtaccccaaggatctccaaatacaagcataaaga-ggcaatccctgaggtagtgtaaagtaaacatcttccacatgatcattacatctata 170  Q
    ||||||||||||||||||||| ||||| ||| | ||| || |||||  |||| ||||||    |||||||||| ||||| ||||||||||||||    
T  4870713 attgtaccccaaggatctccacatacatgcagagagagggaaatcctcgaggcagtgta----aaacatcttcaacatggtcattacatctata 4870802  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 109
Target Start/End: Complemental strand, 37035989 - 37035912
Alignment:
Q  32 ttttgagccatgagtgaatgttcaactcctggaagaacgcaataccattgtaccccaaggatctccaaatacaagcat 109  Q
    ||||||||||| ||||| |||  ||||| |||||||| ||| ||| |||||||| |||||||||||| ||||| ||||    
T  37035989 ttttgagccataagtgagtgtgtaactcatggaagaaagcagtactattgtaccacaaggatctccacatacatgcat 37035912  T

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