View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5082_high_7 (Length: 462)
Name: NF5082_high_7
Description: NF5082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5082_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 403; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 16 - 443
Target Start/End: Complemental strand, 31948203 - 31947776
Alignment:
| Q |
16 |
atagcgatggagaaaataataccaggaataagaaatggccactgttatcaaatttacggagttcacagctaggaagtaactgacgtagtcgttcaccttc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31948203 |
atagcgatggagaaaataataccaggaataagaaatggccactgttatcaaatttacggagttcacagctaggaagtaactgacgtagtcgttcaccttc |
31948104 |
T |
|
| Q |
116 |
ctgttggctaggtagtaaccgatcatttccactaaaaggacaaatgaaataactcagtttcatcttccagaaagagtcatacacttgaaaaggaaagcat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31948103 |
ctgttggctaggtagtaaccgatcatttccactaaaaggacaaatgaaataactcagtttcatcttccagaaagagtcatacacttgaaaaggaaagcat |
31948004 |
T |
|
| Q |
216 |
cctgtgtatgtgaaaaggaaaacatggtatgcatacgaacataaaggtttagaggtaataaattttcattaaattggttgttcacacttggcacttgttt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31948003 |
cctgtgtatgtgaaaaggaaaacatggtatgcatacgaacataaaggtttagaggtaataaattttcattaaattggttgttcacacttggcacttgttt |
31947904 |
T |
|
| Q |
316 |
tatcaatttcnnnnnnnaatagcatttctgctaagtgaaggcaattgtgataaaaaagttaactaagtacttatgattcaatataatgactaatgtaaga |
415 |
Q |
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| T |
31947903 |
tatcaatttctttttttaatagcatttctgctaagtgaaggcaattgtgataaaaaagttaactaagtacatatgattcaatataatgactaatgtaaga |
31947804 |
T |
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| Q |
416 |
tgtacaatcccaagaataatgaacctgc |
443 |
Q |
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| T |
31947803 |
tgtacaatcccaagaataatgaacctgc |
31947776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 24 - 439
Target Start/End: Complemental strand, 31962977 - 31962572
Alignment:
| Q |
24 |
ggagaaaataataccaggaataagaaatggccactgttatcaaatttacggagttcacagctaggaagtaactgacgtagtcgttcaccttcctgttggc |
123 |
Q |
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|||||||||||||||||||||| ||||||||| ||| ||||||||||||||| ||||| |||| ||||||||| |||||| ||| ||||||||| ||| |
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| T |
31962977 |
ggagaaaataataccaggaataggaaatggccgctgacatcaaatttacggagctcacaattaggcagtaactgatgtagtctttctccttcctgtcggc |
31962878 |
T |
|
| Q |
124 |
taggtagtaaccgatcatttccactaaaaggacaaatgaaataactcagtttcatcttccagaaagagtcatacacttgaaaaggaaagcatcctgtgta |
223 |
Q |
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||||||||||| |||||||||||||||||||| |||| ||||||||| |||||||||||||||| | |||||||||||| || |||| |
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| T |
31962877 |
taggtagtaactgatcatttccactaaaagga-aaattaaataactcggtttcatcttccagaatg----------ttgaaaaggaaaaaatatcgtgtg |
31962789 |
T |
|
| Q |
224 |
tgtgaaaaggaaaacatggtatgcatacgaacataaaggtttagaggtaataaattttcattaaattggttgttcacac-ttggcacttgttttatcaat |
322 |
Q |
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| T |
31962788 |
tatgaaaaggaaaacatggtatgtatatgaagataaaggcttagaagtaataaattttcatgaaattggttgttctcactttagcactctttctatcaat |
31962689 |
T |
|
| Q |
323 |
ttcnnnnnnnaatagcatttctgctaagtgaaggcaattgtgataaaaaagttaactaagtacttatgattcaatataatgactaatgtaagatgtacaa |
422 |
Q |
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||| ||||||| |||| ||||||||| ||| | || |||||||||| | |||| |||||| ||||| ||||| ||||||| ||||||| |
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| T |
31962688 |
ttcatttttcaatagcacttctctaaagtgaagggaataggcatcgaaaagttaacaatgtacacttgattccatatagtgactgatgtaaggtgtacaa |
31962589 |
T |
|
| Q |
423 |
tcccaagaataatgaac |
439 |
Q |
| |
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||||||| | ||||||| |
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| T |
31962588 |
tcccaaggagaatgaac |
31962572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 22 - 153
Target Start/End: Complemental strand, 31974621 - 31974490
Alignment:
| Q |
22 |
atggagaaaataataccaggaataagaaatggccactgttatcaaatttacggagttcacagctaggaagtaactgacgtagtcgttcaccttcctgttg |
121 |
Q |
| |
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|||||||||| |||||||| | || |||||| ||||||| ||||||||||||||| || || |||| ||||| | | |||||| ||||||||||||||| |
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| T |
31974621 |
atggagaaaacaataccagtagtaggaaatgtccactgtcatcaaatttacggagctcgcaattaggcagtaatttatgtagtctttcaccttcctgttg |
31974522 |
T |
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| Q |
122 |
gctaggtagtaaccgatcatttccactaaaag |
153 |
Q |
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|||||||||||| ||||||||||||| |||| |
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| T |
31974521 |
gctaggtagtaattgatcatttccactgaaag |
31974490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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