View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5082_low_1 (Length: 600)
Name: NF5082_low_1
Description: NF5082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5082_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 410; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 19 - 507
Target Start/End: Original strand, 11643049 - 11643540
Alignment:
| Q |
19 |
agtacaaaatgttccaacagtttattctacttattggagggatgatggttgggatgtttattcattagagacttttggaga--gagagagtgcaaagagg |
116 |
Q |
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| T |
11643049 |
agtacaaaatgttccaacagtttattctacttattggagggatgatggttgggatgtttattcattagagacttttggagagagagagagtgcaaagagg |
11643148 |
T |
|
| Q |
117 |
actcgtgagcttcctactctttggaaggtttaactttgatgtttaatttattcattcttttaacatattgcagtcatgttgtatgcttaacagatggaaa |
216 |
Q |
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| T |
11643149 |
actcgtgagcttcctactctttggaaggtttaactttgatgtttaatttattcattcttttaacatattgcagtcatgttgtatacttaacagatggaaa |
11643248 |
T |
|
| Q |
217 |
tattttagttatccattaagtagtatgcataagtgacatcaaatttatgttaagtttcaaccaaataaatcagggagcataatctgtttttgtgaactct |
316 |
Q |
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| T |
11643249 |
tattttagttctccattaagtagtatgcataagtgacatcaaatttatgttaagtttcaaccaaataaatcagggagcataatctgtttttgtgaactc- |
11643347 |
T |
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| Q |
317 |
tttgagatttcagaataaaaatgtgtgttcaatttatgg-----nnnnnnngtcaatttccatggctattacttcacaattgtttggctggtggtactgg |
411 |
Q |
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| T |
11643348 |
tttgagatttcagaataaaaatgtgtgttcaatttatggttttttgtagttgtcaatttccatggctattacttcacaattgtttggc---tggtactgg |
11643444 |
T |
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| Q |
412 |
ttttgttttatcatatatagtattatagttcttatagtacaacaaatcattaacacaaataatgaaacaacaaaattgctagcttatagttcttat |
507 |
Q |
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| T |
11643445 |
ttttgttttatcatatttagtattatagttcttatagtacaacaaatcattaacacaaataatgaaacaacaaaattgctagcttatagttcttat |
11643540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 355
Target Start/End: Original strand, 11624543 - 11624897
Alignment:
| Q |
19 |
agtacaaaatgttccaacagtttattctacttattggagggatgatggttgggatgtttattcattagagacttttggagagagagagtgc--------- |
109 |
Q |
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| T |
11624543 |
agtacaaaatgttccaacagtttattctacttattggagggatggtggttgggatgtttattcattagagacttttggggagagagagagcgattccaat |
11624642 |
T |
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| Q |
110 |
-----------aaagaggactcgtgagcttcctactctttggaaggtttaactttgatgtttaatttattcattcttttaacatattgcagtcatgttgt |
198 |
Q |
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| T |
11624643 |
catagtagcgcaaagaggactcgtgagcttcctactctttggaaggtttaactttggtgtttgatttatttattcttttaa-atattgcaatcatgttgt |
11624741 |
T |
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| Q |
199 |
atgcttaacagatggaaatattttagttatccattaagtagtatgcataagtgacatcaaatttatgttaagtttcaaccaaataaatcagggagcataa |
298 |
Q |
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| T |
11624742 |
atgcttaacagatggatattttttagttttccattatgtagtatgcacaagtgacatcaaatttatgttaagtttcaaccaaataaatcatggagcataa |
11624841 |
T |
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| Q |
299 |
tctgtttttgtgaactcttttgagatttcagaataaaaatgtgtgttcaatttatgg |
355 |
Q |
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| T |
11624842 |
tctgtttttgtgaactc-tttgagatttcagaataaaaatgtatgttcaatttatgg |
11624897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 11602906 - 11602829
Alignment:
| Q |
19 |
agtacaaaatgttccaacagtttattctacttattggagggatgatggttgggatgtttattcattagagacttttgg |
96 |
Q |
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| T |
11602906 |
agtacaaaatgttccaacagtttattctacttattggaggaatgatggttgggatgtttattcattagagacttttgg |
11602829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 543 - 593
Target Start/End: Original strand, 11643606 - 11643656
Alignment:
| Q |
543 |
aatactgttgagagaaggagagatttatggagatggtgggaatgaggtgag |
593 |
Q |
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| T |
11643606 |
aatactgttgagagaaggagagatttatagagatggtgggaatgaggtgag |
11643656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 257 - 355
Target Start/End: Complemental strand, 11602685 - 11602589
Alignment:
| Q |
257 |
aaatttatgttaagtttcaaccaaataaatcagggagcataatctgtttttgtgaactcttttgagatttcagaataaaaatgt-gtgttcaatttatgg |
355 |
Q |
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| T |
11602685 |
aaatttatgttaagtttcaaccaaataaataagggagtataatatg-ttttatgaactc-tttgaga-tgcagaataaaaatgtattgttcaatttatgg |
11602589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 512 - 548
Target Start/End: Original strand, 11643528 - 11643564
Alignment:
| Q |
512 |
ttatagttcttatgaaacaacaaatcattaaaatact |
548 |
Q |
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| T |
11643528 |
ttatagttcttatgaaacaacaaatcattaaaatact |
11643564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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