View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5082_low_11 (Length: 451)
Name: NF5082_low_11
Description: NF5082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5082_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 220 - 433
Target Start/End: Original strand, 49542656 - 49542867
Alignment:
| Q |
220 |
gccagccagaagtgctcacccggtgatggcgtcacactgccttctcttgtcactgttttttactctcaattctctctgctaactggtaatttcaccttct |
319 |
Q |
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| T |
49542656 |
gccagccagaagtgctcacgcggtgatggcgtcacactgccttctcttgtcactgttttttactc--aattctctctgctaactggtaatttcaccttct |
49542753 |
T |
|
| Q |
320 |
tcttcttcttcggttgcacattaactgtttgattcaatgaatgaacacgttcttcttgctattcaaggtttatctatgtactttgttttgacctttttca |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
49542754 |
tcttcttcttcggttgcacattaactgtttgattcaatgaatgaacacgttcttcttgcttttcaaggtttatctatgtactttgttttgacctttttca |
49542853 |
T |
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| Q |
420 |
caacttgctgctat |
433 |
Q |
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||| |||||||||| |
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| T |
49542854 |
caatttgctgctat |
49542867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 49542409 - 49542615
Alignment:
| Q |
15 |
agtaaaaaccttgcgagaaaacattgtcgaggaggacaaaggaaatgagcaatatggaacgaatatctagctgtgagtcttgttcggattcggcggccat |
114 |
Q |
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| T |
49542409 |
agtaaaaaccttgcgagaaaacattgtcgaggaggagaaaggaaatgagcaatatggaacgaatatctagctgtgagtcttgttcggattcggcggccat |
49542508 |
T |
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| Q |
115 |
ggcaagggg----agatgaaattgcagtgaggaccacatgccacattatattatgactggctatttcatgtacaatagttaaaattataaatcaccgatt |
210 |
Q |
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| T |
49542509 |
ggcaagggggagatgatgaaattgcaatgaggaccacatgccac-----actatgactggctatttcatgtacaatagttaaaattataaatcaccaatt |
49542603 |
T |
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| Q |
211 |
tctcctcatgcc |
222 |
Q |
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|||||||||||| |
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| T |
49542604 |
tctcctcatgcc |
49542615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 275 - 446
Target Start/End: Original strand, 47608047 - 47608215
Alignment:
| Q |
275 |
ttttttactctcaattctctctgctaactggtaatttcaccttcttcttcttcttcggttgcacattaactgtttgattcaatgaatgaacacgttcttc |
374 |
Q |
| |
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|||||| | ||||||||||| |||||| |||||||||||||||| ||||||||| |||||||||||||| |||||||||| |||| |||||||||||| |
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| T |
47608047 |
tttttttcgctcaattctctatgctaaatggtaatttcaccttc---ttcttcttccgttgcacattaactatttgattcaacgaattaacacgttcttc |
47608143 |
T |
|
| Q |
375 |
ttgctattcaaggtttatctatgtactttgttttgacctttttcacaacttgctgctatagacttctctgct |
446 |
Q |
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| T |
47608144 |
ttgcttttcaaggtttatctatgtactttgttctcacctttttcacaacctgctgctacagatttctctgct |
47608215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 33 - 111
Target Start/End: Original strand, 40918643 - 40918717
Alignment:
| Q |
33 |
aaacattgtcgaggaggacaaaggaaatgagcaatatggaacgaatatctagctgtgagtcttgttcggattcggcggc |
111 |
Q |
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|||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||| |||||||||||| |||||| |
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| T |
40918643 |
aaacattgtcgaggag---aaaggaaaagagcaatatggaacgaatatctagccgtgag-cttgttcggattgggcggc |
40918717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 362
Target Start/End: Complemental strand, 52894426 - 52894385
Alignment:
| Q |
321 |
cttcttcttcggttgcacattaactgtttgattcaatgaatg |
362 |
Q |
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| T |
52894426 |
cttcttcttcggttgcacataaactgtttgattaaatgaatg |
52894385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 2882931 - 2882883
Alignment:
| Q |
33 |
aaacattgtcgaggaggacaaaggaaatgagcaatatggaacgaatatctag |
84 |
Q |
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|||||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
2882931 |
aaacattgtcgaggag---aaaggaaaatagcaatatggaacgaatatctag |
2882883 |
T |
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