View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5082_low_12 (Length: 443)
Name: NF5082_low_12
Description: NF5082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5082_low_12 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 17 - 443
Target Start/End: Original strand, 40481502 - 40481932
Alignment:
| Q |
17 |
gcaaccttaaaatttgtgcaagannnnnnn-aatcattattatcgaatgatttcaacattcttgcatcaaataaacatcgttaaatacttttaagtattt |
115 |
Q |
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| T |
40481502 |
gcaaccttaaaatttgtgcaagattttttttaatcattattatcgaatgatttcaacattcttgcatcaaataaacatctttaaatacttttaagtattt |
40481601 |
T |
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| Q |
116 |
ctaactgcttaaacctattttttaatgaagttattaccattctttcaacnnnnnnnnnnttgaagttattaccataccaacaacctcgaaaaagtaattg |
215 |
Q |
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| T |
40481602 |
ctaactgctcaaacttattttttaatgaagttattaccattctttcaacaaaaaaaaaat-gaagttattaccataccaacaacctcgaaaaaataattg |
40481700 |
T |
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| Q |
216 |
attcgaatctttgttaaagctccgaaaagatttctcagataattgtattacctcatcattatcattctcatctcatttttctaaagctacgaatctttgt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40481701 |
attcgaatctttgttaaagctccgaaaagatttctcagatgattgtattacctcatcattatcattctcatctcatttttctaaagctacgaatctttgt |
40481800 |
T |
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| Q |
316 |
tagaagta----tcggctctatattcatgtcaaatgcaaggcttttgacaatattcatgctagattcaaaatcttcatttgtatattttcaaagtataac |
411 |
Q |
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| T |
40481801 |
tagaagtatcggtcggctctatattcatgtcaaatgcaaggcttttgacaatattcatgctagattcaaaatcttcatttgtatattttcaaagtataac |
40481900 |
T |
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| Q |
412 |
gtgccttcaannnnnnnatttgattttggacc |
443 |
Q |
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| T |
40481901 |
gtgccttcaatttttttatttgattttggacc |
40481932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 310 - 400
Target Start/End: Complemental strand, 10003354 - 10003264
Alignment:
| Q |
310 |
ctttgttagaagtatcggctctatattcatgtcaaatgcaaggcttttgacaatattcatgctagattcaaaatcttcatttgtatatttt |
400 |
Q |
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| T |
10003354 |
ctttgttgaaagtatcagctctatacacacatcaaatgcaaggcttttgccaatattcatactagatttaaagccttcatttttatatttt |
10003264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 10003477 - 10003441
Alignment:
| Q |
54 |
attatcgaatgatttcaacattcttgcatcaaataaa |
90 |
Q |
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| T |
10003477 |
attatccaatgatttcatcattcttgcatcaaataaa |
10003441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 297 - 410
Target Start/End: Complemental strand, 33456451 - 33456336
Alignment:
| Q |
297 |
taaagctacgaatctttgttagaagtatcggctctatattcatgtcaaatgcaaggc-ttttgacaatattcatgctagattcaaaatcttcatttgtat |
395 |
Q |
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||||||||||| ||||||| ||||| |||||| |||| |||| ||||||||||| | ||||| ||| | |||| ||||||||||| ||||||| | ||| |
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| T |
33456451 |
taaagctacgacactttgttggaagtgtcggctttatactcatatcaaatgcaagactttttggcaacaatcatactagattcaaagtcttcatatctat |
33456352 |
T |
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| Q |
396 |
at-tttcaaagtataa |
410 |
Q |
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| T |
33456351 |
atatttcaaaatataa |
33456336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 41767019 - 41766978
Alignment:
| Q |
49 |
tcattattatcgaatgatttcaacattcttgcatcaaataaa |
90 |
Q |
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| T |
41767019 |
tcattattatccaatgatttcaaggttcttgcatcaaataaa |
41766978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 391
Target Start/End: Complemental strand, 27922456 - 27922395
Alignment:
| Q |
330 |
ctatattcatgtcaaatgcaaggcttttgacaatattcatgctagattcaaaatcttcattt |
391 |
Q |
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| T |
27922456 |
ctatactcatatcaaattcaagacttttggcaatatttatactagattcaaagtcttcattt |
27922395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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