View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5082_low_14 (Length: 437)
Name: NF5082_low_14
Description: NF5082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5082_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 18 - 427
Target Start/End: Original strand, 47050235 - 47050647
Alignment:
| Q |
18 |
tttttatggttctctcactcccttgctagcagagcatttgtgtcactagtgattgtcagttatatataatggtttctctgtagcaaaaagtagatatcac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47050235 |
tttttatggttctctcactcccttgctagcagagcatttgtgtcactagtgattgtcagttatatataatggtttctctgtagcaaaaagtagatatcac |
47050334 |
T |
|
| Q |
118 |
tatatatgattgagtttttctcaattattttattaggaaagtggattataagacattggccaattagccaaatacattttcatatagtggagatatatta |
217 |
Q |
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| T |
47050335 |
tatatatgattgagtttttctcaattattttattaggaaagtggattataagacattggccaattagccaaatacattttcatatagtggagatatatta |
47050434 |
T |
|
| Q |
218 |
aaaaacattgtcttttattttt--tgtgtacttttgaaatgtgtgcaagtcatcgagataaaatatatagggtgtcacgtgtctatattttgacgttcaa |
315 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47050435 |
aaaaacattgtcttttattttttatgtgtacttttgaaatgtgtgcaagtcatcgagataaaatatatagggtgtcacgtgtctatattttgacgttcaa |
47050534 |
T |
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| Q |
316 |
ataacacaatcataaattaaaagatgcttgtgtttttcttaagttcatattatattagagattcg-aacctagggaggtgtttccatcactcttttgtct |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
47050535 |
ataacacaatcataaattaaaagatgcttgtgtttttcttaagttcatattatattagagattcgaaacctagggaggtgtttccatcactcttttgtct |
47050634 |
T |
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| Q |
415 |
cttcttatctgtg |
427 |
Q |
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| T |
47050635 |
cttcttatctgtg |
47050647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 156
Target Start/End: Original strand, 47053380 - 47053503
Alignment:
| Q |
30 |
tctcactcccttgctagcagagcatttgtgtcactagtgattgtcagttatatataatggtttctctgtagcaaaaagtagatatcactatatatgattg |
129 |
Q |
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||||||||||||||| ||||| |||| | ||||| |||| |||||||||||||||||||| || ||| |||| |||||||||| | |||||| |
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| T |
47053380 |
tctcactcccttgcttgcagataatttttatcact---gattttcagttatatataatggtttgtcactagggaaaattagatatcacgtcaaatgattt |
47053476 |
T |
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| Q |
130 |
agtttttctcaattattttattaggaa |
156 |
Q |
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|| |||| | |||||||||||| |||| |
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| T |
47053477 |
agctttttttaattattttattcggaa |
47053503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 208
Target Start/End: Original strand, 47053507 - 47053543
Alignment:
| Q |
172 |
attggccaattagccaaatacattttcatatagtgga |
208 |
Q |
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| T |
47053507 |
attggccaattagccaaatacatcttcataaagtgga |
47053543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 326
Target Start/End: Complemental strand, 16764395 - 16764363
Alignment:
| Q |
294 |
gtgtctatattttgacgttcaaataacacaatc |
326 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
16764395 |
gtgtatatattttgacgttcaaataacacaatc |
16764363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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