View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5082_low_16 (Length: 413)
Name: NF5082_low_16
Description: NF5082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5082_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 18 - 409
Target Start/End: Original strand, 25685322 - 25685712
Alignment:
| Q |
18 |
aaaaggatatggaggtagacagagatgagaccagataagtaaacaaagagagagagtgtgttttgtaagatgtaagtgtgaggagaggattcatacacga |
117 |
Q |
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| T |
25685322 |
aaaaggatatggaggtagacagagatgagaccagataagtaaacaaagagagagagtgtgttttgtaagatgtaagtgtgaggagaggattcatacacga |
25685421 |
T |
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| Q |
118 |
gtgcctagaaagggttttgtgtcttctcttattggacaaatcttatctcatctatttttattgggaacccaaggcatctatggatatattttattccctc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25685422 |
gtgcctagaaagggttttgtgtcttctcttattggacaaatcttatctcatctatttttattgggaacccaaggcatctatggatatattttattccctc |
25685521 |
T |
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| Q |
218 |
aattcatattcttcacttcnnnnnnnnnctacttaaaattcnnnnnnnnncttgagtgtgaattatatttactattcataagtgggaatatattttaggg |
317 |
Q |
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| T |
25685522 |
aattcatattcttcactt-tttttttttctacttaaaattttttttttttctcgagtgtgaattatatttactattcataagtgggaatatattttaggg |
25685620 |
T |
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| Q |
318 |
taaactcaaccctagtatttaaatataatttctattatacaatactatgttgacattgattttgaagtgtttataatttgttatttgtctca |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
25685621 |
taaactcaaccctagtatttaaatataatttctattatacaatattatgttgacgttgattttgaagtgtttgcaatttgttatttgtctca |
25685712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 373 - 409
Target Start/End: Complemental strand, 35035128 - 35035091
Alignment:
| Q |
373 |
ttgattttgaagt-gtttataatttgttatttgtctca |
409 |
Q |
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| T |
35035128 |
ttgattttgaagttgtttataatttgttatttgtctca |
35035091 |
T |
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