View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5082_low_18 (Length: 372)
Name: NF5082_low_18
Description: NF5082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5082_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 15 - 367
Target Start/End: Original strand, 44349414 - 44349758
Alignment:
| Q |
15 |
caaaaagaagggtccttttgatgcaaaagtagactaactgctccacccatggactctccatacaagaacctagcttttcccttgtactcttgaagcactg |
114 |
Q |
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| T |
44349414 |
caaaaagaaggatccttttgatgcaaaagtagactaactgctccacccatggactctccatacaagaacctagcttttcccatgtactcttgaagcactg |
44349513 |
T |
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| Q |
115 |
gaattaattaacatgaaaatgaatgatgaaaataatagaattgattaaaaatgtatacactcaaaggattagacaaaggctttgaatccataccactaac |
214 |
Q |
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| T |
44349514 |
gaattaa----catgaaaatgaatgatgaaaata---gaattgattaaaa-tgtatacactcaaaagattagacaaaggctttgaatccataccactaac |
44349605 |
T |
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| Q |
215 |
tgacttgaaaaagtcataacagtcattaacaatgttattgaacttcttaatgtaacaacgaacaccttcagattgtccatgtccttcataatctacacca |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44349606 |
tgacttgaaaaagtcataacagtcattaacaatgttattgaacttcttaatgtaacaacgaacaccttcagattgtccatgtccttcataatctacacca |
44349705 |
T |
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| Q |
315 |
tacacagcatatttggcacatgctagccgcactccacattctgtagtataatc |
367 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
44349706 |
tacacagcatatttggcacatgctagccgtactccacattctgtagtacaatc |
44349758 |
T |
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