View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5082_low_2 (Length: 599)
Name: NF5082_low_2
Description: NF5082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5082_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 123 - 581
Target Start/End: Complemental strand, 56442989 - 56442533
Alignment:
| Q |
123 |
tgaagtatgcaatgcatgaatccaatccaatccaatccaagtaaatctgcaacgtggcaaggagtgaggggtgatggcagcagcagcgataggagtgaga |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
56442989 |
tgaagtatgcaatgcatgaatccaatccaatccaa-----gtaaatttgcaacgtggcaaagagtgaggggtgatggcagcagtagcgataggagtgagg |
56442895 |
T |
|
| Q |
223 |
tgctgctgctcattgtcgtttccgtctcatcgcaaatcttcatcttcttcatgttctgattattattacagaaaaagaagtagtagaatcaacgcttctt |
322 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
56442894 |
tgctgctgctcattgtcgtttccgtctcatcgcaaatcttcatcttcttcatgctctgattattattacagaagaagaagtagtagaatcaacgcttctt |
56442795 |
T |
|
| Q |
323 |
cattgttctggggatcttctaaggacaacaacaaacataataacatttcttcttctt---cttcatcgcatcagcaacaattcagcttcaatgtgaccac |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
56442794 |
cattgttctggggatcttctaaggacaacaacaaacagaataacatttcttcttcttcttcttcatcgcatcagcaacaattcagcttcaatgttaccac |
56442695 |
T |
|
| Q |
420 |
cacaacagaatctgaagaagataaagataagattattactgtttcttttgtatcttcaatttcagatattccatccacccaatgggatgcatgtgctctt |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56442694 |
cacaacagaatctgaagaagataaagataaaattattactgtttcttttgtatcttcaatttcagatattccatccacccaatgggatgcatgtgctctt |
56442595 |
T |
|
| Q |
520 |
gatgctacaggaggaccagacaaattcaatccatttctctcacacgcatttctatcctctct |
581 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
56442594 |
gatgctactggaggaccagacaagttcaatccatttctctcacacgcttttctatcctctct |
56442533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University