View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5082_low_20 (Length: 351)
Name: NF5082_low_20
Description: NF5082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5082_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 7 - 335
Target Start/End: Original strand, 55180997 - 55181318
Alignment:
| Q |
7 |
tcgaagaaaataaagtggcaaatgtaaaaactaggaagagaaatttcaactnnnnnnngtgagcagaggtaggttgatttacttataatttttggaaggc |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||| |
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| T |
55180997 |
tcgaagaaaataaagtggcaaatgtaaaaactaggaagagaaatttcaactaaaaaaagtcagcagaggtaggttggtttacttataatttttggaaggc |
55181096 |
T |
|
| Q |
107 |
ccttgaaaaatactactcatttaattnnnnnnnnnnnnnnnnnttggtcaagatttaattaaattatttatgttgatcaaactatttataatttactagt |
206 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55181097 |
ccttgaaaaatactactcatttaattaaaaaaaaaa-------ttggtcaagatttaattaaattatttatgttgatcaaactatttataatttactagt |
55181189 |
T |
|
| Q |
207 |
tattcatttactaattttctctttgtctacatattaattgtttattgcttatgttgagcgctttnnnnnnntatttatagcattttattaataataagag |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
55181190 |
tattcatttactaattttctctttgtctacatattaattgtttattgcttatgttgagcgctttaaaaaaatatttatagcattttattaataataagag |
55181289 |
T |
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| Q |
307 |
tatcaaaacaagaagatatatcaaaataa |
335 |
Q |
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|||||| |||||||||||||||||||||| |
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| T |
55181290 |
tatcaagacaagaagatatatcaaaataa |
55181318 |
T |
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