View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5082_low_21 (Length: 345)
Name: NF5082_low_21
Description: NF5082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5082_low_21 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 10 - 345
Target Start/End: Complemental strand, 41605162 - 41604827
Alignment:
| Q |
10 |
aagaaaatactaatggtgttgatcacaatttgatccataaccacaagtactcacaaagcctaagtttctcgaactcgtctgaatttgagacatcctcatc |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41605162 |
aagaaaatactaatggtgttgatcacaatttgatccataaccacaagtactcacaaagcctaagtttctcgaactcgtctgaatttgagacatcctcatc |
41605063 |
T |
|
| Q |
110 |
tgaaaataacgatgaggatctctcaactattgcacacactatgaaatcgtcgaaggagaaagggcaaagtggtcataggagggcaaggaaaagttggaga |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41605062 |
tgaaaataacgatgaggatctctcaactattgcacacactatgaaatcgtcgaaggagaaagggcaaagtggtcataggagggcaaggaaaagttggaga |
41604963 |
T |
|
| Q |
210 |
ggtaaagttgaggagattgtagattctcacatgaaaaatattattgagactcaagatgcttggatggagagaatgttgagtgttgtcgaacaaagagaac |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
41604962 |
ggtaaagttgaggagattgtagattctcacatgaaaaatattattgagactcaagatgcttggatggagagaatgttgagtgttgttgaacaaagagaac |
41604863 |
T |
|
| Q |
310 |
aagagatggcatcaaaggaagaagaaaggaagagaa |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
41604862 |
aagagatggcatcaaaggaagaagaaaggaagagaa |
41604827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University