View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5082_low_23 (Length: 328)
Name: NF5082_low_23
Description: NF5082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5082_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 17 - 281
Target Start/End: Complemental strand, 20644780 - 20644518
Alignment:
| Q |
17 |
tcaatatccattaaaataattgacgtctttttccgtttctcaaattgaaacgtgattatgtccc-ttgctagctttttctaataaaatctcagatagata |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||| |||| |
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| T |
20644780 |
tcaatatccattaaaataattgacgtctttttccgtttctcaaattgacacgtgattctgtccccttgctagctttttctaataaaatctcagatcgata |
20644681 |
T |
|
| Q |
116 |
cattgttgatgtttaacgtgctatcttgtcttatggattaataagaaaagggtttgaatttgttaatcttagatctttatgggattgtttggttttagat |
215 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20644680 |
cattgttgatgcttaacgtgctatcttgtcttatggattaataagaaaagggtttgaatttgttaatcttagatctttatgggattgtttggttttagat |
20644581 |
T |
|
| Q |
216 |
tgaagaaataaatccatgtaataggaatttatgaacctgaattaaaaaccattacatagtagttaa |
281 |
Q |
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||||| |||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||| |
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| T |
20644580 |
tgaaggaataaatccatg---taggaatttatgaacctaaattaaaaaccattacatggtagttaa |
20644518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 280 - 328
Target Start/End: Complemental strand, 20644286 - 20644238
Alignment:
| Q |
280 |
aaacatgaaattctattttagtgatacgttagactgttttctttcaaat |
328 |
Q |
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| T |
20644286 |
aaacatgaaattctattttagtgatacgttagactgttttcttttaaat |
20644238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 65
Target Start/End: Complemental strand, 3174695 - 3174652
Alignment:
| Q |
22 |
atccattaaaataattgacgtctttttccgtttctcaaattgaa |
65 |
Q |
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| T |
3174695 |
atccactaaaataattgacgtctttttccatttctcaaattgaa |
3174652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 20 - 284
Target Start/End: Complemental strand, 33248790 - 33248525
Alignment:
| Q |
20 |
atatccattaaaataattgacgtctttttccgtttctcaaattgaaacgtgattatgtccc-ttgctagctttttctaataaaatctcagatagatacat |
118 |
Q |
| |
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|||||||||||||||||||||||| |||||||||| ||||||||| |||||||| |||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
33248790 |
atatccattaaaataattgacgtccttttccgtttttcaaattgacacgtgattctgtccccttgctagctttttctaataaaatcccagatagatacat |
33248691 |
T |
|
| Q |
119 |
tgttgatgtttaacgtgctatcttgtcttatggattaataagaaaagggtttgaatttgttaatcttagatctttatgggattgtttggttttagattga |
218 |
Q |
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| || ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33248690 |
ttttaatgcttaacgtgctatcttgtcttatggattaataagaaaaggatttgaatttgttaatcttagatctttatgggattgtttggttttagattga |
33248591 |
T |
|
| Q |
219 |
agaaataaatccatgtaataggaatttatgaacctgaattaaaaaccattacatagtagttaaaca |
284 |
Q |
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||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||| |
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|
| T |
33248590 |
agaaataaatccatgtaataggaatttatgatcccgaattaaaaaccattacatggtagttaaaca |
33248525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 280 - 325
Target Start/End: Complemental strand, 33248290 - 33248245
Alignment:
| Q |
280 |
aaacatgaaattctattttagtgatacgttagactgttttctttca |
325 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
33248290 |
aaacatgaaattatattttagtgatacgttagactgttttctttca |
33248245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 3944306 - 3944215
Alignment:
| Q |
17 |
tcaatatccattaaaataattgacgtctttttccgtttctcaaattgaaacgtgattatgt-cccttgctagctttttctaataaaatctca |
107 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
3944306 |
tcaatatccattaaaataattgacgtctttttccgtttctcaaattgacacgtgtttatgtccccttgctagctttttctaataaaatctca |
3944215 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 4022903 - 4022950
Alignment:
| Q |
17 |
tcaatatccattaaaataattgacgtctttttccgtttctcaaattga |
64 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
4022903 |
tcaatatccattaaaataattgacgtcttttttcgtttctcaaattga |
4022950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 65
Target Start/End: Complemental strand, 16068491 - 16068448
Alignment:
| Q |
22 |
atccattaaaataattgacgtctttttccgtttctcaaattgaa |
65 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
16068491 |
atccattaaaataattgacgtttttttccgtttctcaaattgaa |
16068448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 16066162 - 16066114
Alignment:
| Q |
17 |
tcaatatccattaaaataattgacgtctttttccgtttctcaaattgaa |
65 |
Q |
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|||| ||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
16066162 |
tcaagatccattaaaagaattgacatctttttccgtttctcaaattgaa |
16066114 |
T |
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