View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5082_low_31 (Length: 296)
Name: NF5082_low_31
Description: NF5082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5082_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 17 - 288
Target Start/End: Original strand, 15601275 - 15601546
Alignment:
| Q |
17 |
cagtagttgcagcagcgaacactccagtagcaatgacagttgaaattagcatacaagactctgcggttttcttcatccatgactctgcattttctcttag |
116 |
Q |
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|||||||||||||||| |||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15601275 |
cagtagttgcagcagcaaacactccggtagcaatgacggctgaaattagcatacaagactctgcggttttcttcatccatgactctgcattttctcttag |
15601374 |
T |
|
| Q |
117 |
attttgatgctcttttgagaagacttcttgtgcagtaaagccttcagagtttctcatgtttatttgtgctggcagcattatcttctttactttctatcat |
216 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15601375 |
tttttgatgctcttttgagaagacttcttgtgcagtaaggccttcagagtttctcatgtttatttgtgctggcagcattatcttctttactttctatcat |
15601474 |
T |
|
| Q |
217 |
atgaaaatgtttatatatgttaagtaaaatagatatatataaggaatcggtgttaaatttatgtagtataat |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
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| T |
15601475 |
atgaaaatgtttatatatgttaagtaaaatagatatataaaaggaatcggtgttaaatttatatagtataat |
15601546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 15654545 - 15654772
Alignment:
| Q |
18 |
agtagttgcagcagcgaacactccagtagcaatgacagttgaaattagcatacaagactctgcggttttcttcatccatgactctgcattttctcttaga |
117 |
Q |
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||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||| || ||||| |||||||| |||||||||||||||||||| |
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| T |
15654545 |
agtagttgcagcagcaaacactccggtagcaatgacagttgaaattagcatgcaagactcggcagtttttttcatccacgactctgcattttctcttagt |
15654644 |
T |
|
| Q |
118 |
ttttgatgctcttttgagaagacttcttgtgcagtaaagccttcagagtttctcatgtttatttgtgctggcagcattatcttctttactttctatcata |
217 |
Q |
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||| |||||| ||||||| | |||||||||||||||||||||||||||||||| ||||| ||||| |||| |||||||||||||||||||| ||| | |
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| T |
15654645 |
gtttcatgctcaattgagaatagctcttgtgcagtaaagccttcagagtttctcatctttatctgtgcaggcaacattatcttctttactttctgtcaca |
15654744 |
T |
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| Q |
218 |
tgaaaatgtttatatatgttaagtaaaata |
247 |
Q |
| |
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|||||||| |||||| ||||||||||||| |
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| T |
15654745 |
tgaaaatg--tatatacgttaagtaaaata |
15654772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 15645493 - 15645707
Alignment:
| Q |
18 |
agtagttgcagcagcgaacactccagtagcaatgacagttgaaattagcatacaagactctgcggttttcttcatccatgactctgcattttctcttaga |
117 |
Q |
| |
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||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||| || ||||| |||||||| |||||||||||||||||||| |
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| T |
15645493 |
agtagttgcagcagcaaacactccggtagcaatgacagttgaaattagcatgcaagactcggccgtttttttcatccacgactctgcattttctcttagt |
15645592 |
T |
|
| Q |
118 |
ttttgatgctcttttgagaagacttcttgtgcagtaaagccttcagagtttctcatgtttatttgtgctggcagcattatcttctttactttctatcata |
217 |
Q |
| |
|
||| |||||| ||||||| | |||||||||||||||||||||||||||||||| ||||| ||||| |||| |||||||||||||||||||| ||| | |
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| T |
15645593 |
gtttcatgctcaattgagaatagctcttgtgcagtaaagccttcagagtttctcatctttatctgtgcaggcaacattatcttctttactttctgtcaca |
15645692 |
T |
|
| Q |
218 |
tgaaaatgtttatat |
232 |
Q |
| |
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||||||||| ||||| |
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| T |
15645693 |
tgaaaatgtatatat |
15645707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 15624868 - 15625095
Alignment:
| Q |
18 |
agtagttgcagcagcgaacactccagtagcaatgacagttgaaattagcatacaagactctgcggttttcttcatccatgactctgcattttctcttaga |
117 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||| || ||||| |||||||| |||||||| ||||||||||| |
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| T |
15624868 |
agtagttgcagcagcaaacactccggtagcaatgacagttgaaattagcatgcaagactcggcagtttttttcatccacgactctgcgttttctcttagt |
15624967 |
T |
|
| Q |
118 |
ttttgatgctcttttgagaagacttcttgtgcagtaaagccttcagagtttctcatgtttatttgtgctggcagcattatcttctttactttctatcata |
217 |
Q |
| |
|
||| |||||| ||||||| | |||||||| ||||||||||||||||||||||| ||||| ||| | |||| |||||||||||||||||||| ||| | |
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| T |
15624968 |
gtttcatgctcaattgagaatagctcttgtgctgtaaagccttcagagtttctcatctttatctgtccaggcaacattatcttctttactttctgtcaca |
15625067 |
T |
|
| Q |
218 |
tgaaaatgtttatatatgttaagtaaaata |
247 |
Q |
| |
|
|||||||| |||||||||||||||||||| |
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| T |
15625068 |
tgaaaatg--tatatatgttaagtaaaata |
15625095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 24 - 232
Target Start/End: Original strand, 15534098 - 15534306
Alignment:
| Q |
24 |
tgcagcagcgaacactccagtagcaatgacagttgaaattagcatacaagactctgcggttttcttcatccatgactctgcattttctcttagattttga |
123 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| || ||||| |||||||| |||||||||| || ||||| ||| | |
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| T |
15534098 |
tgcagcagcgaacactccggtagcaatgactgttgaaattagcatacatgactccgcagtttttttcatccaagactctgcatcctcccttagttttgca |
15534197 |
T |
|
| Q |
124 |
tgctcttttgagaagacttcttgtgcagtaaagccttcagagtttctcatgtttatttgtgctggcagcattatcttctttactttctatcatatgaaaa |
223 |
Q |
| |
|
||||| |||||||| | ||||||||||| |||| |||||||||| ||| |||||||||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
15534198 |
tgctcatttgagaataactcttgtgcagtcaagcgttcagagtttttcaactttatttgtgctggcaacattatcttctttacattctatcatatgaaaa |
15534297 |
T |
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| Q |
224 |
tgtttatat |
232 |
Q |
| |
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||| ||||| |
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| T |
15534298 |
tgtatatat |
15534306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 18 - 223
Target Start/End: Original strand, 15493753 - 15493958
Alignment:
| Q |
18 |
agtagttgcagcagcgaacactccagtagcaatgacagttgaaattagcatacaagactctgcggttttcttcatccatgactctgcattttctcttaga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||| |||||||| |||||||||| ||| ||||| |
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| T |
15493753 |
agtagttgcagcagcgaacactccagtagcaatgactgttgaaattagcatacaagactcggcagtttttttcatccaagactctgcatcttcccttagt |
15493852 |
T |
|
| Q |
118 |
ttttgatgctcttttgagaagacttcttgtgcagtaaagccttcagagtttctcatgtttatttgtgctggcagcattatcttctttactttctatcata |
217 |
Q |
| |
|
|||| |||||| || ||||| | ||||| |||||| | | ||| |||||| | || ||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
15493853 |
ttttcatgctcattcgagaacagttcttctgcagtcatgtctttggagttttttgacttaatttgtgctggcaacattatcttctttactttctatcata |
15493952 |
T |
|
| Q |
218 |
tgaaaa |
223 |
Q |
| |
|
||||| |
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|
| T |
15493953 |
cgaaaa |
15493958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 24 - 232
Target Start/End: Original strand, 15517585 - 15517793
Alignment:
| Q |
24 |
tgcagcagcgaacactccagtagcaatgacagttgaaattagcatacaagactctgcggttttcttcatccatgactctgcattttctcttagattttga |
123 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| || ||||| |||||||| |||||||||| ||| ||||| |||| | |
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| T |
15517585 |
tgcagcagcgaacactccggtagcaatgactgttgaaattagcatacacgactccgcagtttttttcatccaagactctgcatcttcccttagtttttca |
15517684 |
T |
|
| Q |
124 |
tgctcttttgagaagacttcttgtgcagtaaagccttcagagtttctcatgtttatttgtgctggcagcattatcttctttactttctatcatatgaaaa |
223 |
Q |
| |
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||||| |||||||| | ||||| |||||| | ||||| |||||| || || || ||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
15517685 |
tgctcatttgagaacagttcttctgcagtcacgcctttggagtttttcgacttaatctgtgcgggcagcattatcttctttacattctatcatatgaaaa |
15517784 |
T |
|
| Q |
224 |
tgtttatat |
232 |
Q |
| |
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||| ||||| |
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|
| T |
15517785 |
tgtatatat |
15517793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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