View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5082_low_34 (Length: 279)
Name: NF5082_low_34
Description: NF5082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5082_low_34 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 15 - 279
Target Start/End: Complemental strand, 16471103 - 16470839
Alignment:
| Q |
15 |
acttctcaaacactgaaagctgtgaatgagagcaaattatttactgttatgtattgactagtttaaatcaatacatatttttgggcacaacaacgaatcc |
114 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
16471103 |
acttcttaaacaccgaaagctgtgaatgagagcaaattatttactgttatgtattgaccagtttaagtcaatacatatttttgggcacaacaacgaatcc |
16471004 |
T |
|
| Q |
115 |
ttttgtcgacatttttgtcatctaacaattttggacactttggttagttgaggtctaaaggatagaccatgcatgctatatttaaccaactccatttgct |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16471003 |
ttttgtcgacatttttgtcatctaacaattttggacactttggttagttgaggtctaaaggatagaccatgcatgctatatttaaccaactccatttgct |
16470904 |
T |
|
| Q |
215 |
tgaattaataaataatgaagagaaaattaaaaacctacttaattaattattaatgtaagaatatg |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
16470903 |
tgaattaataaataatgaagagaaaattaaaaacctacttaattaattaataatgtaagaatatg |
16470839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University