View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5082_low_36 (Length: 274)
Name: NF5082_low_36
Description: NF5082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5082_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 27560203 - 27560418
Alignment:
| Q |
19 |
atgtatttgttgtacaaaagaggcgttgaagaactaaatacatacagataaagaaaaacaccaaggtagacttaccaatgcttttgaagactttattttc |
118 |
Q |
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| T |
27560203 |
atgtatttgttgtacaaaagaggcgttgaagaactaaatacatacagataaagaaaaacaccaaggtagacttaccaatgcttttgaagactttatttcc |
27560302 |
T |
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| Q |
119 |
aaaacctgttcagcacatttgattgtaaggctcttgagttcgcttgtctgcttcaaaacaaaggaatcaataaaccttaatgcttaaaaagtatgtatag |
218 |
Q |
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| T |
27560303 |
aaaacctgttcagcacatttgattgtaaggctcttgagttcgcttgtctgcttcaaaacaaaggaatcaataaaccttaatgcttaaaaagtatgtatgg |
27560402 |
T |
|
| Q |
219 |
tattaattcaaggaca |
234 |
Q |
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|||||||||||||||| |
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| T |
27560403 |
tattaattcaaggaca |
27560418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 88 - 266
Target Start/End: Original strand, 36667764 - 36667933
Alignment:
| Q |
88 |
acttaccaatgcttttgaagactttattttcaaaacctgttcagcacatttgattgtaaggctcttgagttcgcttgtctgcttcaaaacaaaggaatca |
187 |
Q |
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|||||||| ||||||||| |||||||||| | || |||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36667764 |
acttaccattgcttttgacgactttatttccgaatcctgctcagcacatttgtttgcaaggctcttgagttcgcttgtctgcttcaaaacaaaggaatca |
36667863 |
T |
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| Q |
188 |
ataaaccttaatgcttaaaaagtatgtatagtattaattcaaggacaataacccgcctacaccctcttgcagtataatc |
266 |
Q |
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| T |
36667864 |
ataaaccttaatgcttaa---------atagtattaactcaaggacaagaactcgcctataacctctggcagtataatc |
36667933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 62 - 240
Target Start/End: Complemental strand, 24203628 - 24203449
Alignment:
| Q |
62 |
acagataaagaaaaacaccaaggta-gacttaccaatgcttttgaagactttattttcaaaacctgttcagcacatttgattgtaaggctcttgagttcg |
160 |
Q |
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|||||||||||||||||| |||||| |||||||||||| |||||||| ||| ||| ||||||||||||||||||||| ||| ||||||||| |||||| |
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| T |
24203628 |
acagataaagaaaaacacaaaggtaagacttaccaatgtttttgaagtcttcattcccaaaacctgttcagcacatttatttgcaaggctcttcagttcg |
24203529 |
T |
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| Q |
161 |
cttgtctgcttcaaaacaaaggaatcaataaaccttaatgcttaaaaagtatgtatagtattaattcaaggacaataacc |
240 |
Q |
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| T |
24203528 |
cttgtccgcttcaaaacaaaggaaccaataaaccttaatgcttaaaaagtatgtatggtataaattcaaggacaagaacc |
24203449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 214
Target Start/End: Original strand, 30870622 - 30870681
Alignment:
| Q |
153 |
tgagttcgcttgtctgcttcaaaacaaaggaatcaataaaccttaatgcttaaaaagtatgt |
214 |
Q |
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| T |
30870622 |
tgagtttgattgtctgcttcaaaac-aagggatcaataaatcttaatgc-taaaaagtatgt |
30870681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 79 - 263
Target Start/End: Original strand, 29409684 - 29409868
Alignment:
| Q |
79 |
ccaaggtagacttaccaatgcttttgaagactttattttcaaaacctgttcagcacatttgattgtaaggctcttgagttcgcttgtctgcttcaaaaca |
178 |
Q |
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|||| ||||||| |||||||||||||||||||| |||| |||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||| |
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| T |
29409684 |
ccaaagtagactcaccaatgcttttgaagacttcatttccaaaacctgttcagcacatttgtttgcaaagctcttgagttcgcttgtctgcttcaaaaca |
29409783 |
T |
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| Q |
179 |
aaggaatcaataaaccttaatgcttaaaaagtatgtatagtattaattcaaggacaataacccgcctacaccctcttgcagtata |
263 |
Q |
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| T |
29409784 |
aaggacataacgaaccttaatgcttaaaaagtatgtatggtactagttcaaggacaagaacccgcctataaactcttgcagtata |
29409868 |
T |
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