View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5082_low_37 (Length: 272)

Name: NF5082_low_37
Description: NF5082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5082_low_37
NF5082_low_37
[»] chr2 (4 HSPs)
chr2 (8-260)||(35426487-35426739)
chr2 (26-79)||(28814796-28814849)
chr2 (22-84)||(15333276-15333338)
chr2 (43-79)||(35494891-35494927)
[»] chr4 (3 HSPs)
chr4 (22-85)||(29010116-29010179)
chr4 (41-79)||(47533851-47533889)
chr4 (41-89)||(22579222-22579270)
[»] chr7 (2 HSPs)
chr7 (22-79)||(33487183-33487240)
chr7 (22-70)||(42082748-42082796)
[»] chr6 (4 HSPs)
chr6 (38-76)||(1038439-1038477)
chr6 (22-79)||(214736-214793)
chr6 (22-79)||(32549404-32549461)
chr6 (22-79)||(33013021-33013078)
[»] chr1 (1 HSPs)
chr1 (8-78)||(37543856-37543926)
[»] chr5 (1 HSPs)
chr5 (22-79)||(39043609-39043666)
[»] chr3 (2 HSPs)
chr3 (22-79)||(1699932-1699989)
chr3 (22-79)||(40362083-40362140)


Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 8 - 260
Target Start/End: Original strand, 35426487 - 35426739
Alignment:
Q  8 ataaaatttagagataaatttgtcattttctgatgtttcttagcattgagtgaagtgtgaaaagcaattttcctaatttttaagagaattgagtcaataa 107  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35426487 ataaaatttagagttaaatttgtcattttctgatgtttcttagcattgagtgaagtgtgaaaagcaattttcctaatttttaagagaattgagtcaataa 35426586  T
Q  108 gattaacattaaatacccctttctgtcccctccccctcattttctccattacataaggaattttatggctgtttctagaagaaacataaaacgtgatgag 207  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  35426587 gattaacattaaatacccctttctgtcccctcccccccattttctccattacataaggaattttaaggctgtttctagaagaaacataaaacgtgatgag 35426686  T
Q  208 gactttgagttgctagtctccgataagtggaattcttgttctctagagagtat 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35426687 gactttgagttgctagtctccgataagtggaattcttgttctctagagagtat 35426739  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 28814796 - 28814849
Alignment:
Q  26 tttgtcattttctgatgtttcttagcattgagtgaagtgtgaaaagcaattttc 79  Q
    ||||||||||  || ||||| ||||||||||||||||| |||||||||||||||    
T  28814796 tttgtcatttcatggtgtttattagcattgagtgaagtttgaaaagcaattttc 28814849  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 15333276 - 15333338
Alignment:
Q  22 taaatttgtcattttctgatgtttcttagcattgagtgaagtgtgaaaagcaattttcctaat 84  Q
    |||| |||||||||| |||||||||||| | |||  ||||||| |||||||||||||| ||||    
T  15333276 taaacttgtcattttatgatgtttcttaactttgtttgaagtgggaaaagcaattttcataat 15333338  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 79
Target Start/End: Complemental strand, 35494927 - 35494891
Alignment:
Q  43 tttcttagcattgagtgaagtgtgaaaagcaattttc 79  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  35494927 tttcttaacattgagtgaagtgtgaaaaacaattttc 35494891  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 29010116 - 29010179
Alignment:
Q  22 taaatttgtcattttctgatgtttcttagcattgagtgaagtgtgaaaagcaattttcctaatt 85  Q
    ||||||||||||||| || |||||||||||||||| |||||||||||||||| |||||| ||||    
T  29010116 taaatttgtcattttatggtgtttcttagcattgaatgaagtgtgaaaagcatttttccaaatt 29010179  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 79
Target Start/End: Original strand, 47533851 - 47533889
Alignment:
Q  41 tgtttcttagcattgagtgaagtgtgaaaagcaattttc 79  Q
    ||||||||||||||| ||||||||||||| |||||||||    
T  47533851 tgtttcttagcattgcgtgaagtgtgaaaggcaattttc 47533889  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 89
Target Start/End: Complemental strand, 22579270 - 22579222
Alignment:
Q  41 tgtttcttagcattgagtgaagtgtgaaaagcaattttcctaattttta 89  Q
    ||||| ||||||||||||||||| ||||||| |||||||  ||||||||    
T  22579270 tgttttttagcattgagtgaagtatgaaaagtaattttcaaaattttta 22579222  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 33487240 - 33487183
Alignment:
Q  22 taaatttgtcattttctgatgtttcttagcattgagtgaagtgtgaaaagcaattttc 79  Q
    ||||||||| ||||| || |||||||||||||||||| ||||||||||||||||||||    
T  33487240 taaatttgttattttatggtgtttcttagcattgagtaaagtgtgaaaagcaattttc 33487183  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 42082796 - 42082748
Alignment:
Q  22 taaatttgtcattttctgatgtttcttagcattgagtgaagtgtgaaaa 70  Q
    ||||||||||||||  || ||||||||||||| || |||||||||||||    
T  42082796 taaatttgtcatttcatggtgtttcttagcatcgaatgaagtgtgaaaa 42082748  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 76
Target Start/End: Original strand, 1038439 - 1038477
Alignment:
Q  38 tgatgtttcttagcattgagtgaagtgtgaaaagcaatt 76  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  1038439 tgatgtttcttagcattgagtgaagtgtgaaaagtaatt 1038477  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 214793 - 214736
Alignment:
Q  22 taaatttgtcattttctgatgtttcttagcattgagtgaagtgtgaaaagcaattttc 79  Q
    ||||||||||||||  | ||||||||||||||||  ||||||| ||||| ||||||||    
T  214793 taaatttgtcatttcataatgtttcttagcattgtatgaagtgggaaaaacaattttc 214736  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 32549461 - 32549404
Alignment:
Q  22 taaatttgtcattttctgatgtttcttagcattgagtgaagtgtgaaaagcaattttc 79  Q
    |||| |||||||||  || ||||||||||||||| ||||| |||||||| ||||||||    
T  32549461 taaacttgtcatttaatggtgtttcttagcattgtgtgaaatgtgaaaaacaattttc 32549404  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 33013078 - 33013021
Alignment:
Q  22 taaatttgtcattttctgatgtttcttagcattgagtgaagtgtgaaaagcaattttc 79  Q
    ||||||| ||||||| || |||||| ||| |||| |||||||| ||||||||||||||    
T  33013078 taaatttatcattttatggtgtttcatagtattgcgtgaagtgcgaaaagcaattttc 33013021  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 37543856 - 37543926
Alignment:
Q  8 ataaaatttagagataaatttgtcattttctgatgtttcttagcattgagtgaagtgtgaaaagcaatttt 78  Q
    ||||||||||| | ||||||| ||||||| |  |||| ||||| ||||||||||||||||||| |||||||    
T  37543856 ataaaatttagggttaaatttttcattttatagtgttccttagtattgagtgaagtgtgaaaaacaatttt 37543926  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 39043609 - 39043666
Alignment:
Q  22 taaatttgtcattttctgatgtttcttagcattgagtgaagtgtgaaaagcaattttc 79  Q
    |||||||||| |||  || ||||||||||||||| ||||||||| ||| |||||||||    
T  39043609 taaatttgtcctttcatggtgtttcttagcattgtgtgaagtgtaaaaggcaattttc 39043666  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 1699989 - 1699932
Alignment:
Q  22 taaatttgtcattttctgatgtttcttagcattgagtgaagtgtgaaaagcaattttc 79  Q
    ||||||||| ||||  || ||||||||||||||| |||||||||||||  ||||||||    
T  1699989 taaatttgttatttcatggtgtttcttagcattgtgtgaagtgtgaaagacaattttc 1699932  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 40362083 - 40362140
Alignment:
Q  22 taaatttgtcattttctgatgtttcttagcattgagtgaagtgtgaaaagcaattttc 79  Q
    ||||||| ||||||| || |||||||||||||||  |||| ||||||| |||||||||    
T  40362083 taaatttttcattttatggtgtttcttagcattgtatgaaatgtgaaaggcaattttc 40362140  T

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