View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5082_low_38 (Length: 265)
Name: NF5082_low_38
Description: NF5082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5082_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 42 - 256
Target Start/End: Original strand, 27670745 - 27670959
Alignment:
| Q |
42 |
gatcacaatttaaaacatgtgtttactttttgtgcaggttcaagttggttaagggggaaatgctgaaattcttgaaaccttaatgccttcaaaactatgt |
141 |
Q |
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| T |
27670745 |
gatcataatttaaaacctgtgtttattttttgtgtaggttcaagttggttaagggggaaatgctgaaattcttgaaacctgaatgccttcaaaactatgt |
27670844 |
T |
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| Q |
142 |
agaaaagatggatgaattagtgaaaacagtattattgagagaattgaaagagaataaaacaattgaagttgtgaggttgatgaagaaactgacctatgat |
241 |
Q |
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| T |
27670845 |
agaaaagatggatgaattagtgaaaacagtattattgagagaattgaaagagaataaaacaattgaagttgtgaggttgatgaagaaactgacctatgat |
27670944 |
T |
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| Q |
242 |
atggcttgcattata |
256 |
Q |
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| T |
27670945 |
atggcttgcaatata |
27670959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 59 - 251
Target Start/End: Complemental strand, 27675494 - 27675302
Alignment:
| Q |
59 |
tgtgtttactttttgtgcaggttcaagttggttaagggggaaatgctgaaattcttgaaaccttaatgccttcaaaactatgtagaaaagatggatgaat |
158 |
Q |
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||||||||||||||||||||| || |||| | |||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
27675494 |
tgtgtttactttttgtgcaggcacaggttgttgaagggggaaatgttgaaattcttgaaacctgaatgccttcaaaactatgtgaaaaagatggatgaat |
27675395 |
T |
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| Q |
159 |
tagtgaaaacagtattattgagagaattgaaagagaataaaacaattgaagttgtgaggttgatgaagaaactgacctatgatatggcttgca |
251 |
Q |
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| T |
27675394 |
tagtgtacaaagtattacttaaagaattgaaagagaataaaacaactcaagttgtgaggttgatgaagaaactatcctatgatatggcatgca |
27675302 |
T |
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