View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5082_low_39 (Length: 263)
Name: NF5082_low_39
Description: NF5082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5082_low_39 |
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Alignment Details
Target: chr2 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 11 - 249
Target Start/End: Original strand, 32425386 - 32425645
Alignment:
| Q |
11 |
tcttgtaccatcacctagcttctaattataatcactcagtgtaagtggtgtgaataacttcaacgctgtcctgagaataacatgatgtgaattctttcca |
110 |
Q |
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| T |
32425386 |
tcttgtaccatcacctagcttctaattacaatcagtcagtgtaagtggtgtgaataacttcaacgctgtactgagaataacatgatgtgaattctttcca |
32425485 |
T |
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| Q |
111 |
tagcatataatatttcttgttgtagaaggtacataacatgatgcttggtggacttctttgattccctctcactaggtgagccctt--------------- |
195 |
Q |
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| T |
32425486 |
tagcatataatatttcttgttgtagaaggtacataacatgatgcttggtggacttctttgattccctctcacta-gtgagccctttataaatgggcaagc |
32425584 |
T |
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| Q |
196 |
-------tatgatcctaagtatcatgaggtgtgggttaggaacaatgctcaccttcaacgc |
249 |
Q |
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| T |
32425585 |
agttccatatgatcctaagtatcatgaggtgtgggttaggaacaatgctcaccttcaacgc |
32425645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 32421305 - 32421347
Alignment:
| Q |
196 |
tatgatcctaagtatcatgaggtgtgggttaggaacaatgctc |
238 |
Q |
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| T |
32421305 |
tatgatcccaagtatcatgaggagtgggttaggaacaatgctc |
32421347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 95 - 198
Target Start/End: Original strand, 1543507 - 1543610
Alignment:
| Q |
95 |
atgtgaattctttccatagcatataatatttcttgttgtagaaggtacataacatgatgcttggtggacttctttgattccctctcactaggtgagccct |
194 |
Q |
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| T |
1543507 |
atgtgaagtctttccatagcatataatatttcttgttgtaaaaggtacataacatgatgcttggtggacttgtttgtttccctctcgccaggggagccct |
1543606 |
T |
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| Q |
195 |
ttat |
198 |
Q |
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|||| |
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| T |
1543607 |
ttat |
1543610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 1543630 - 1543672
Alignment:
| Q |
196 |
tatgatcctaagtatcatgaggtgtgggttaggaacaatgctc |
238 |
Q |
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| T |
1543630 |
tatgatcccaagtatcatgaggagtgggttaggaacaatgctc |
1543672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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