View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5082_low_43 (Length: 250)
Name: NF5082_low_43
Description: NF5082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5082_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 33901652 - 33901891
Alignment:
| Q |
1 |
ttcttcctccatctcttgatcccaaaaccaacgttgaatcaaaagatgttgttatctccgaagaacataacatctcagctagacttttcattccaaaaac |
100 |
Q |
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| T |
33901652 |
ttcttcctccatctcttgatcccaaaaccaacgttgaatcaaaagatgttgttatctccgaagaacataacatctcagctagacttttcattccaaaaac |
33901751 |
T |
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| Q |
101 |
caattacccaccaacccaaaaactccctcttcttgtttacatccatggtggtgctttctgcattgaaactcctttttcaccaaactaccataactacctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33901752 |
caattacccaccaacccaaaaactccctcttcttgtttacatccatggtggtgctttctgcattgaaactcctttttcaccaaactaccataactacctc |
33901851 |
T |
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| Q |
201 |
aactctgttacttcacttgctaacgttattggtgtctctg |
240 |
Q |
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| T |
33901852 |
aactctgttacttcacttgctaacgttattggtgtctctg |
33901891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 33897199 - 33896960
Alignment:
| Q |
1 |
ttcttcctccatctcttgatcccaaaaccaacgttgaatcaaaagatgttgttatctccgaagaacataacatctcagctagacttttcattccaaaaac |
100 |
Q |
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||||||||||||| ||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33897199 |
ttcttcctccatcccttgatcaagcaaccaacgttgaatcaaaagacgttgtaatctccgaagaacataacatctcagctagacttttcattcccaaaac |
33897100 |
T |
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| Q |
101 |
caattacccaccaacccaaaaactccctcttcttgtttacatccatggtggtgctttctgcattgaaactcctttttcaccaaactaccataactacctc |
200 |
Q |
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| T |
33897099 |
caatcacccaccaatccaaaaactccctgtctttgtctacttccatggtggtggtttctgcattgaaacacctttctcaccatgctaccataactatctt |
33897000 |
T |
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| Q |
201 |
aactctgttacttcacttgctaacgttattggtgtctctg |
240 |
Q |
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| T |
33896999 |
aactctgttacttcacttgctaacgttattggtgtctctg |
33896960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 111 - 182
Target Start/End: Complemental strand, 33918568 - 33918497
Alignment:
| Q |
111 |
ccaacccaaaaactccctcttcttgtttacatccatggtggtgctttctgcattgaaactcctttttcacca |
182 |
Q |
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|||| ||||||||||||||| ||||||||| |||||||||||| ||||||| | ||||| ||||| |||||| |
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| T |
33918568 |
ccaaaccaaaaactccctctccttgtttacttccatggtggtggtttctgcgtagaaacacctttctcacca |
33918497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 111 - 202
Target Start/End: Complemental strand, 19643045 - 19642954
Alignment:
| Q |
111 |
ccaacccaaaaactccctcttcttgtttacatccatggtggtgctttctgcattgaaactcctttttcaccaaactaccataactacctcaa |
202 |
Q |
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|||| ||||||||||||||| ||||||||| |||| ||||||| ||||||| | ||||| ||||| ||||||| ||||| || |||||||| |
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| T |
19643045 |
ccaaaccaaaaactccctctccttgtttacttccacggtggtggtttctgcgtagaaacacctttctcaccaacataccacaattacctcaa |
19642954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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