View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5082_low_46 (Length: 248)

Name: NF5082_low_46
Description: NF5082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5082_low_46
NF5082_low_46
[»] chr5 (2 HSPs)
chr5 (1-243)||(39184736-39184978)
chr5 (101-238)||(8730292-8730427)
[»] chr1 (4 HSPs)
chr1 (90-238)||(42373538-42373685)
chr1 (126-238)||(17032909-17033025)
chr1 (86-238)||(19597952-19598105)
chr1 (88-156)||(41919898-41919966)
[»] chr4 (2 HSPs)
chr4 (82-199)||(16501182-16501300)
chr4 (88-156)||(30963879-30963947)
[»] chr2 (4 HSPs)
chr2 (81-207)||(31902910-31903036)
chr2 (53-207)||(39339357-39339511)
chr2 (101-238)||(25505480-25505615)
chr2 (96-209)||(22886011-22886124)
[»] chr8 (4 HSPs)
chr8 (83-235)||(9519052-9519205)
chr8 (88-150)||(34866640-34866702)
chr8 (96-175)||(10551752-10551832)
chr8 (88-156)||(34389590-34389658)
[»] chr3 (4 HSPs)
chr3 (124-220)||(25595121-25595217)
chr3 (86-207)||(17501759-17501880)
chr3 (96-238)||(5555991-5556135)
chr3 (99-197)||(1653452-1653550)
[»] chr7 (6 HSPs)
chr7 (88-238)||(37792747-37792898)
chr7 (88-150)||(38484991-38485053)
chr7 (53-207)||(47326396-47326550)
chr7 (81-150)||(3420242-3420311)
chr7 (96-199)||(12480298-12480402)
chr7 (88-156)||(38305676-38305744)
[»] chr6 (1 HSPs)
chr6 (88-199)||(12793553-12793664)


Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 39184978 - 39184736
Alignment:
Q  1 tcagttccgcaggttaatggggttggttgtttactccggcgacatacgtttcctccatgtcaccggcagctgcatttctctgatttaggttgtgattccg 100  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |    
T  39184978 tcagttccgcaggttcatggggttggttgtttactccggcgacatatgttttctccatgtcaccggcagctgcatttctctgatttaggttgtgattctg 39184879  T
Q  101 cttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgttttgtgttgctgtctgttttcttggtgaggcggtttggca 200  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||     
T  39184878 cttcaaactggcgtcgttgcctatgttttgtagttgtgtttcgtcttcctatatatatgttttgtgttgctgtctgttttcttggtgaggcggtttggcg 39184779  T
Q  201 gcgtagttttggctctatcgttggcttgtgggtatattattcg 243  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  39184778 gcgtagttttggctctatcgttggcttgtgggtatattcttcg 39184736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 101 - 238
Target Start/End: Original strand, 8730292 - 8730427
Alignment:
Q  101 cttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgttttgtgttgctgtctgttttcttggtgaggcggtttggca 200  Q
    ||||| |||||||||| ||||| |||||||| |||  | ||||||||||| | ||| | |||| |||||||| |||||||| || |||| | ||||||||    
T  8730292 cttcagactggcgtcgctgcccgtgttttgttgtttggcttcgtcttcctctggatctatttt-tgttgctgcctgttttcatg-tgagacagtttggca 8730389  T
Q  201 gcgtagttttggctctatcgttggcttgtgggtatatt 238  Q
    | |||||| || |||||||||||| | |||||||||||    
T  8730390 gtgtagttctgtctctatcgttggttggtgggtatatt 8730427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 90 - 238
Target Start/End: Original strand, 42373538 - 42373685
Alignment:
Q  90 ttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgttttgtgttgctgtctgttttcttggtgag 189  Q
    ||||||||||||||||||| || |||||||||| ||||||| ||||||||||||||||||||| ||| |||| | |||| ||| ||||||||||||||||    
T  42373538 ttgtgattccgcttcaaaccggtgtcgttgcccgtgttttgaagttgtgtttcgtcttcctatcgatctgttctatgttactgcctgttttcttggtgag 42373637  T
Q  190 gcggtttggcagcgtagttttggctctatcgttggcttgtgggtatatt 238  Q
    | |||||| | ||||||||||| ||||||| |||| |||||||||||||    
T  42373638 gtggtttgacggcgtagttttgtctctatctttgg-ttgtgggtatatt 42373685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 126 - 238
Target Start/End: Original strand, 17032909 - 17033025
Alignment:
Q  126 ttttgtagttgtgtttcgtcttcctatagatatgtt---ttgtgttgctgtctgttttcttggtgaggcggtttggcagcgtag-ttttggctctatcgt 221  Q
    |||||| ||||  |||||||||||| |||||||||    || ||||||||  ||||||||||||||| ||||||||||| |||| ||||| ||||||||     
T  17032909 ttttgttgttggatttcgtcttcctctagatatgtgatattatgttgctgcttgttttcttggtgagacggtttggcagtgtagtttttgtctctatcgc 17033008  T
Q  222 tggcttgtgggtatatt 238  Q
    ||  |||||||| ||||    
T  17033009 tgatttgtgggtttatt 17033025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 238
Target Start/End: Original strand, 19597952 - 19598105
Alignment:
Q  86 taggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgt-tttgtgttgctgtctgttttcttg 184  Q
    ||||||||| |||| ||||| || ||||||||||||| |||| ||| |||| ||||| ||||||| | | | ||| |||| ||||||| ||| |||||||    
T  19597952 taggttgtgtttccacttcagaccggcgtcgttgcccgtgttctgttgttgggtttcatcttccttttggtttgtgtttgggttgctgcctg-tttcttg 19598050  T
Q  185 gtgaggcggtttggcagcgtag-ttttggctctatcgttggcttgtgggtatatt 238  Q
    | |||| |||||||  ||||||  |||| |||| ||| ||| ||||| |||||||    
T  19598051 gcgaggtggtttggaggcgtagcctttgtctctttcgatggtttgtgagtatatt 19598105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 156
Target Start/End: Original strand, 41919898 - 41919966
Alignment:
Q  88 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagat 156  Q
    ||||||| |||||||||||||  |||||||||||| |||||||| || |  |||| ||||||| |||||    
T  41919898 ggttgtggttccgcttcaaaccagcgtcgttgcccgtgttttgttgtgggatttcatcttcctctagat 41919966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 82 - 199
Target Start/End: Original strand, 16501182 - 16501300
Alignment:
Q  82 gatttaggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgt-tttgtgttgctgtctgtttt 180  Q
    ||||| |||||||||||| |||||||| ||||||| |||||||||| ||| ||||  ||| |||||||| || || ||| ||||||| || |||||||||    
T  16501182 gatttgggttgtgattccacttcaaaccggcgtcgctgcccatgttgtgttgttggttttagtcttcctctaaatttgtgtttgtgtggccgtctgtttt 16501281  T
Q  181 cttggtgaggcggtttggc 199  Q
    |||||||||||||||||||    
T  16501282 cttggtgaggcggtttggc 16501300  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 156
Target Start/End: Original strand, 30963879 - 30963947
Alignment:
Q  88 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagat 156  Q
    ||||||| |||| |||||||| ||||||| ||||| |||||||| ||||  |||||||||||| |||||    
T  30963879 ggttgtggttccacttcaaaccggcgtcgatgcccgtgttttgtggttggatttcgtcttcctctagat 30963947  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 81 - 207
Target Start/End: Complemental strand, 31903036 - 31902910
Alignment:
Q  81 tgatttaggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgt-tttgtgttgctgtctgttt 179  Q
    |||| ||||||||| ||||||||||||| ||||||| ||||| |||||||| |||| ||||||||||||| ||||| | | || |||||||||| || ||    
T  31903036 tgatctaggttgtgtttccgcttcaaaccggcgtcgctgcccgtgttttgttgttgggtttcgtcttcctctagatctatgttagtgttgctgtttg-tt 31902938  T
Q  180 tcttggtgaggcggtttggcagcgtagt 207  Q
    ||||| ||||||  |||||| |||||||    
T  31902937 tcttgctgaggctatttggcggcgtagt 31902910  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 53 - 207
Target Start/End: Complemental strand, 39339511 - 39339357
Alignment:
Q  53 ctccatgtcaccggcagctgcatttctctgatttaggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctat 152  Q
    |||| |||||||||| || || ||||| |||||| ||||||| || | |||||||| | ||||| ||| | |||||||| ||||  |||| ||||||| |    
T  39339511 ctccttgtcaccggcggccgcctttctatgattttggttgtgttttcacttcaaaccgacgtcgctgctcgtgttttgttgttggatttcctcttcctct 39339412  T
Q  153 agatatgt-tttgtgttgctgtctgttttcttggtgaggcggtttggcagcgtagt 207  Q
    |||| | | |||||||||||||||| |||||||||||||  ||||||| |||||||    
T  39339411 agatctatatttgtgttgctgtctg-tttcttggtgaggatgtttggcggcgtagt 39339357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 101 - 238
Target Start/End: Complemental strand, 25505615 - 25505480
Alignment:
Q  101 cttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgttttgtgttgctgtctgttttcttggtgaggcggtttggca 200  Q
    ||||| |||||||||| ||||| |||||||| |||  | ||||||||||| | ||| | |||| |||||||| |||||||| || |||| | ||||||||    
T  25505615 cttcagactggcgtcgctgcccgtgttttgttgtttggcttcgtcttcctctggatctatttt-tgttgctgcctgttttcatg-tgagacagtttggca 25505518  T
Q  201 gcgtagttttggctctatcgttggcttgtgggtatatt 238  Q
    | |||||| || |||||||||||| | |||||||||||    
T  25505517 gtgtagttctgtctctatcgttggttggtgggtatatt 25505480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 209
Target Start/End: Complemental strand, 22886124 - 22886011
Alignment:
Q  96 ttccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgttt-tgtgttgctgtctgttttcttggtgaggcggt 194  Q
    |||||||||| |||||||||| |  || |||||||| |||| ||||| ||||||| | |||||||   ||||||||||  ||||| |||||||||| |||    
T  22886124 ttccgcttcagactggcgtcgctatccgtgttttgttgttgggtttcatcttcctcttgatatgtaactgtgttgctgcttgttt-cttggtgaggtggt 22886026  T
Q  195 ttggcagcgtagttt 209  Q
    ||||| |||| ||||    
T  22886025 ttggcggcgtggttt 22886011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 235
Target Start/End: Original strand, 9519052 - 9519205
Alignment:
Q  83 atttaggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgt-tttgtgttgctgtctgttttc 181  Q
    |||| ||||||| | |||||||||||  |||||| ||||| |||||||| |||| |||||||||| || ||||| ||| ||||| ||||||| |||||||    
T  9519052 atttgggttgtgttcccgcttcaaaccagcgtcgctgcccgtgttttgttgttgggtttcgtctttctctagatttgtgtttgtattgctgt-tgttttc 9519150  T
Q  182 ttggtgaggcggtttggcagcgtag-ttttggctctatcgttggcttgtgggtat 235  Q
     |||||||| || ||||| | |||| ||||| | |||||| ||| ||||||||||    
T  9519151 atggtgaggtgggttggcggtgtagtttttgtccctatcgctggtttgtgggtat 9519205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 88 - 150
Target Start/End: Complemental strand, 34866702 - 34866640
Alignment:
Q  88 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcct 150  Q
    ||||||| ||||||||||||| ||||||| ||||| |||||||| ||||  ||||||||||||    
T  34866702 ggttgtggttccgcttcaaaccggcgtcgctgcccgtgttttgttgttggatttcgtcttcct 34866640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 175
Target Start/End: Original strand, 10551752 - 10551832
Alignment:
Q  96 ttccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgt-tttgtgttgctgtct 175  Q
    ||||||||||||  ||||||| ||||| || ||||| |||| ||||||||||||| ||||| | | |||||||||||||||    
T  10551752 ttccgcttcaaatcggcgtcgctgcccgtgctttgttgttgggtttcgtcttcctctagatctatgtttgtgttgctgtct 10551832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 156
Target Start/End: Complemental strand, 34389658 - 34389590
Alignment:
Q  88 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagat 156  Q
    ||||||| ||||||||||||| ||||||| ||||| |||||||| || |  ||||||| |||| |||||    
T  34389658 ggttgtgcttccgcttcaaaccggcgtcgctgcccgtgttttgttgtggaatttcgtcctcctctagat 34389590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 124 - 220
Target Start/End: Complemental strand, 25595217 - 25595121
Alignment:
Q  124 tgttttgtagttgtgtttcgtcttcctatagatatgtttt-gtgttgctgtctgttttcttggtgaggcggtttggcagcgtagttttggctctatcg 220  Q
    |||||||| ||| ||||||||| |||| ||||| |||||| |||||||||  ||||| |||||||||||||||||||| |||||||| | ||||||||    
T  25595217 tgttttgttgttatgtttcgtcatcctctagatttgtttttgtgttgctgcttgttt-cttggtgaggcggtttggcaacgtagtttcgtctctatcg 25595121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 86 - 207
Target Start/End: Complemental strand, 17501880 - 17501759
Alignment:
Q  86 taggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgt-tttgtgttgctgtctgttttcttg 184  Q
    ||||||||| ||||||||||||||| |||| ||| || |||||||| |||   |||||||||||| ||||| | | |||||||||||  || |||| |||    
T  17501880 taggttgtgtttccgcttcaaactgacgtcattgtccgtgttttgttgttagatttcgtcttcctctagatctatatttgtgttgcttcctatttt-ttg 17501782  T
Q  185 gtgaggcggtttggcagcgtagt 207  Q
    ||||||  |||||||||||||||    
T  17501781 gtgaggatgtttggcagcgtagt 17501759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 238
Target Start/End: Original strand, 5555991 - 5556135
Alignment:
Q  96 ttccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttccta-tagatatgt-tttgtgttgctgtctgttttcttggtgaggcgg 193  Q
    |||||||||| || ||||||| ||||| |||| | | |||| | |||||||||  | ||||||||| ||||||||||||  ||||||| ||||| |||||    
T  5555991 ttccgcttcagaccggcgtcgctgcccgtgttcttttgttgggcttcgtcttcaaaatagatatgtgtttgtgttgctgcttgttttcatggtgtggcgg 5556090  T
Q  194 tttggcagcgtagttttggctctatcgttggcttgtgggtatatt 238  Q
    || ||| || | |||||| |||| ||| ||| |||||||||||||    
T  5556091 ttaggctgcattgttttgtctctgtcgctggtttgtgggtatatt 5556135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 197
Target Start/End: Complemental strand, 1653550 - 1653452
Alignment:
Q  99 cgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcct--atagatatgttttgtgttgctgtctgttttcttggtgaggcggttt 196  Q
    |||||||||| ||||||| ||||| |||||||| ||||  ||||||||||||  |||  |||| |||||||||||| ||| |||||| |||||| |||||    
T  1653550 cgcttcaaaccggcgtcgatgcccgtgttttgttgttggatttcgtcttcctccatatttatg-tttgtgttgctgcctg-tttcttcgtgaggaggttt 1653453  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 238
Target Start/End: Original strand, 37792747 - 37792898
Alignment:
Q  88 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgt-tttgtgttgctgtctgttttcttggt 186  Q
    ||||||| ||||||||||||| |||||||||| || |||||||  |||| ||||| |||| || | |||  || |||||||||||||||| |||||||||    
T  37792747 ggttgtgtttccgcttcaaaccggcgtcgttgtccgtgttttgctgttgggtttcatctttctcttgatccgtgtttgtgttgctgtctg-tttcttggt 37792845  T
Q  187 gaggcggtttggcagcgtagttt-tggctctatcgttggcttgtgggtatatt 238  Q
      |  |||||||| ||||||||| || |||| ||||||| |||||||| ||||    
T  37792846 tggctggtttggcggcgtagtttctgtctctgtcgttggtttgtgggtttatt 37792898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 88 - 150
Target Start/End: Original strand, 38484991 - 38485053
Alignment:
Q  88 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcct 150  Q
    ||||||| ||||||||||||| ||||||| |||||||||||||| ||   |||||||||||||    
T  38484991 ggttgtgtttccgcttcaaaccggcgtcgctgcccatgttttgttgtcaggtttcgtcttcct 38485053  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 207
Target Start/End: Complemental strand, 47326550 - 47326396
Alignment:
Q  53 ctccatgtcaccggcagctgcatttctctgatttaggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctat 152  Q
    |||| |||||||||| || || ||||| |||||| ||||||| || | |||||||  || |||| ||||| |||||||| ||||  |||| ||||||| |    
T  47326550 ctccttgtcaccggcggccgcctttctatgatttcggttgtgttttcacttcaaatcggtgtcgctgcccgtgttttgttgttggatttcctcttcctct 47326451  T
Q  153 agatatgt-tttgtgttgctgtctgttttcttggtgaggcggtttggcagcgtagt 207  Q
    ||||   | ||||||||||||  ||||| ||||||||||  ||||||| |||||||    
T  47326450 agatcaatatttgtgttgctgcttgttt-cttggtgaggatgtttggcggcgtagt 47326396  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 150
Target Start/End: Complemental strand, 3420311 - 3420242
Alignment:
Q  81 tgatttaggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcct 150  Q
    |||| ||||||||| ||||||||| ||| ||||||| ||| | |||||||| |||  |||||||||||||    
T  3420311 tgatctaggttgtggttccgcttcgaaccggcgtcgctgctcgtgttttgttgtttggtttcgtcttcct 3420242  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 199
Target Start/End: Original strand, 12480298 - 12480402
Alignment:
Q  96 ttccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttc-gtcttcctatagatatgt-tttgtgttgctgtctgttttcttggtgaggcgg 193  Q
    |||| |||||||| ||||||| ||| | |||||||| ||||  |||| |||||||| | ||| ||| ||||||| ||  |||||||||||||||||||||    
T  12480298 ttccacttcaaaccggcgtcgctgctcgtgttttgttgttggttttcagtcttcctct-gatctgtatttgtgtggccatctgttttcttggtgaggcgg 12480396  T
Q  194 tttggc 199  Q
    ||||||    
T  12480397 tttggc 12480402  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 156
Target Start/End: Original strand, 38305676 - 38305744
Alignment:
Q  88 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagat 156  Q
    ||||||| ||||||||||||| ||||| | ||||  |||||||| ||||  |||||||||||| |||||    
T  38305676 ggttgtggttccgcttcaaaccggcgttgctgcctgtgttttgttgttggatttcgtcttcctctagat 38305744  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 199
Target Start/End: Original strand, 12793553 - 12793664
Alignment:
Q  88 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatat-gttttgtgttgctgtctgttttcttggt 186  Q
    ||||||| || |||||||||||||||||||||||| |||||||  | ||  |||||||||||| | ||| |   |||||||||||||||| |||||||||    
T  12793553 ggttgtgttttcgcttcaaactggcgtcgttgcccgtgttttggtgatggatttcgtcttcctctggatctaaatttgtgttgctgtctg-tttcttggt 12793651  T
Q  187 gaggcggtttggc 199  Q
    ||||  |||||||    
T  12793652 gagggtgtttggc 12793664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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