View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5082_low_52 (Length: 245)
Name: NF5082_low_52
Description: NF5082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5082_low_52 |
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Alignment Details
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 6291363 - 6291510
Alignment:
| Q |
1 |
tccaagaatattaattcaaacaagaaaagaaaggaattctaatcctttcaacaatacctctatatctatatctatatattcccttccattttggtatcct |
100 |
Q |
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| T |
6291363 |
tccaaaaatattaattcaaacaagaaaagaaaggaattctaatcctttcaacaatacctctatatctatatctatatattcccttccattttggtatcct |
6291462 |
T |
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| Q |
101 |
agaatcttttgtcttccttcctcacaatgacaatattcatcacaacaa |
148 |
Q |
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| T |
6291463 |
agaatcttttctcttccttcctcacaatgacaatattcatcacaacaa |
6291510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 212 - 245
Target Start/End: Original strand, 6291574 - 6291607
Alignment:
| Q |
212 |
ccttaaatttttaactctaagaattactataact |
245 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
6291574 |
ccttaaatttttaactctaagaattactataact |
6291607 |
T |
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