View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5082_low_54 (Length: 239)
Name: NF5082_low_54
Description: NF5082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5082_low_54 |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 17 - 223
Target Start/End: Original strand, 39877138 - 39877344
Alignment:
| Q |
17 |
gaaccagagtcaggggaaaaattgacaaaaatctctgcnnnnnnnnntcctaaaactcaacttccattacctattaaagctgtattccacttattgacaa |
116 |
Q |
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| T |
39877138 |
gaaccagagtcaggggaaaaattgacaaaaatctctgcaaaaaaaaatcctaaaactcaacttccattacctattaaagctgtattccacttattgacaa |
39877237 |
T |
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| Q |
117 |
tttttgtgaatgtattagaacacgaagacataagaatctgtctcacacgattctcaaacaccttcatgtgttcatcgtcaactcttaagaaggcaacagc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39877238 |
tttttgtgaatgtattagaacacgaagacataagaatctgtctcacacgattctcaaacaccttcatgtgttcatcgtcaactcttaagaaggcaacagc |
39877337 |
T |
|
| Q |
217 |
tgttctt |
223 |
Q |
| |
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||||||| |
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| T |
39877338 |
tgttctt |
39877344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 17 - 223
Target Start/End: Original strand, 44780373 - 44780578
Alignment:
| Q |
17 |
gaaccagagtcaggggaaaaattgacaaaaatctctgcnnnnnnnnntcctaaaactcaacttccattacctattaaagctgtattccacttattgacaa |
116 |
Q |
| |
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|||||| |||||||| ||||||||||||||| |||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
44780373 |
gaaccaaagtcagggaaaaaattgacaaaaacctctgcaaaaaaac-tcctagaactcaaattccattacctattaaagctgtattccacttattgacaa |
44780471 |
T |
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| Q |
117 |
tttttgtgaatgtattagaacacgaagacataagaatctgtctcacacgattctcaaacaccttcatgtgttcatcgtcaactcttaagaaggcaacagc |
216 |
Q |
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|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44780472 |
tttttgtgaatgtagtagaacccgaagacataagaatctgtctcacacgattctcaaacaccttcatgtgttcatcgtcaactcttaagaaggcaacagc |
44780571 |
T |
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| Q |
217 |
tgttctt |
223 |
Q |
| |
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||||||| |
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| T |
44780572 |
tgttctt |
44780578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 86 - 207
Target Start/End: Complemental strand, 2898762 - 2898641
Alignment:
| Q |
86 |
cctattaaagctgtattccacttattgacaatttttgtgaatgtattagaacacgaagacataagaatctgtctcacacgattctcaaacaccttcatgt |
185 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||| || || | |
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| T |
2898762 |
cctattaaagctgtattccacttattgacaatttttgtgaatgtagtagaacccgaagacataagaatctgcctcacacgattctcaaacattttaatct |
2898663 |
T |
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| Q |
186 |
gttcatcgtcaactcttaagaa |
207 |
Q |
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||||||| |||||||||||||| |
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| T |
2898662 |
gttcatcatcaactcttaagaa |
2898641 |
T |
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