View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5082_low_57 (Length: 238)
Name: NF5082_low_57
Description: NF5082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5082_low_57 |
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| [»] chr4 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 33248000 - 33248221
Alignment:
| Q |
17 |
aaattaaagtttaaagttcgagtttttctctataaatcactgaattatacaaaacttaaactcaaaagagtagtggataacaagatttagtccgcccata |
116 |
Q |
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| T |
33248000 |
aaattaaagtttaaagttcgattttttctctgtaaatcactaaattatacaaaacttaaactcaaaagagtagtggataacaagatttagtccacccaaa |
33248099 |
T |
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| Q |
117 |
taaacaagatttagtcgccaatttattcatagcctggaataaatgtcaaacagaagggtatggaagccaactattaaacaaagaggcaaactattcaaga |
216 |
Q |
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| T |
33248100 |
taaacaagatttagtcgccaatttattcatagcctgaaataaatgtcaaacagaagggtatggaagccagctattaaacaaagaggcaaactattcaaga |
33248199 |
T |
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| Q |
217 |
agaaaacacaagcattaaatgc |
238 |
Q |
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| T |
33248200 |
aaaacacacaagcattaaatgc |
33248221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 20643994 - 20644217
Alignment:
| Q |
17 |
aaattaaagtttaaagttcgagttttt-ctctataaatcactgaattatacaaaacttaaa-ctcaaaagagtagtggataacaagatttagtccgccca |
114 |
Q |
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| T |
20643994 |
aaattaaagtttaaagttcgatttttttctctataaatcactaaattatacaaaacttaaaactcaaaagagtagtggataacatgatttagtccaccca |
20644093 |
T |
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| Q |
115 |
tataaacaagatttagtcgccaatttattcatagcctggaataaatgtcaaacagaagggtatggaagccaactattaaacaaagaggcaaactattcaa |
214 |
Q |
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| T |
20644094 |
aataaacaagatttagtcgccaatttattcatagcctggattaaatgtcaaacagaagggtatggaagccaactattaaacaaagagacaaactattcaa |
20644193 |
T |
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| Q |
215 |
gaagaaaacacaagcattaaatgc |
238 |
Q |
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| T |
20644194 |
gaagaaaacacaagcattaaatgc |
20644217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 163
Target Start/End: Original strand, 14904241 - 14904284
Alignment:
| Q |
120 |
acaagatttagtcgccaatttattcatagcctggaataaatgtc |
163 |
Q |
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| T |
14904241 |
acaagatttagtcaccaacttattcatagcctgaaataaatgtc |
14904284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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