View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5082_low_6 (Length: 490)
Name: NF5082_low_6
Description: NF5082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5082_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 286 - 487
Target Start/End: Complemental strand, 29650290 - 29650089
Alignment:
| Q |
286 |
agaaatagaaagagagagtcaaatgaatttaagaaaaagtggtgttagtttaatgtcaatgtcacataattaagagtatgaaaccctagccatgtgtgtg |
385 |
Q |
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| T |
29650290 |
agaaatagaaagagagagtcaaatgaatttaagaaaaagtggtgttagtttaatgtcaatgtcacataattaagagtatgaaaccctagccatgtgtgtg |
29650191 |
T |
|
| Q |
386 |
tgtataaaagagctagtttgcttcacaatcctaacaaacataacacaaaagcacattgatcatataatgaaaatggcttcttcatttagtttcttatcac |
485 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
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| T |
29650190 |
tgtataaaagagctagtttgcttcacaatcctaacaaacataacacaaaagcacattgatcatataataaaaatggcttcttcatttagtttcttaacac |
29650091 |
T |
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| Q |
486 |
tc |
487 |
Q |
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|| |
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| T |
29650090 |
tc |
29650089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 29650544 - 29650442
Alignment:
| Q |
1 |
tcacatttcgtcaggttttgtttcttctcaaaattgaatttgttcataccttaatttattctaatgaactcaaaagagatatatgagattaatagaatat |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
29650544 |
tcacatttcgtcaggttttgtttcttcacaaaattgaatttgttcacaccttaatttattctaatgaactcaaaagagatatctgagattaatagaatat |
29650445 |
T |
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| Q |
101 |
agc |
103 |
Q |
| |
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||| |
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| T |
29650444 |
agc |
29650442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 202 - 255
Target Start/End: Complemental strand, 29650343 - 29650290
Alignment:
| Q |
202 |
ggcagtgcttgaatgtgaaccattataacgtgagaaagttgaagttgttaaaca |
255 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29650343 |
ggcagtgcttgaatgtgaaccattataacgtgagaaagttgaagttgttaaaca |
29650290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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