View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5082_low_61 (Length: 228)
Name: NF5082_low_61
Description: NF5082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5082_low_61 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 15 - 228
Target Start/End: Original strand, 27669866 - 27670079
Alignment:
| Q |
15 |
attggagagacatatggttttgttaaagcactgaggcaagacaagggctctgagtggttagaagaaagggtatctaaatatggtcctgtcttcaaaactt |
114 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
27669866 |
attggagagacatatggttttcttaaagcactgaggcaagacaagggctctgagtggttagaagaaagggtagctaaatatggtcctgtcttcaaaactt |
27669965 |
T |
|
| Q |
115 |
ccatattgggttcccctactgtgtttattattggccaacagggaaacaagtttgttcttggttcctcacatgatgttctttctagtaagaaacctccaac |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27669966 |
ccatattgggttcccctactgtgtttattattggtcaacagggaaacaagtttgttcttggttcctcacatgatgttctttctagtaagaaacctccaac |
27670065 |
T |
|
| Q |
215 |
acttcaaaggattt |
228 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
27670066 |
acttcaaaggattt |
27670079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 7 - 191
Target Start/End: Complemental strand, 27677483 - 27677299
Alignment:
| Q |
7 |
atccttttattggagagacatatggttttgttaaagcactgaggcaagacaagggctctgagtggttagaagaaagggtatctaaatatggtcctgtctt |
106 |
Q |
| |
|
||||| |||||||||||||| | ||| ||||||||| ||||||| |||||||||||||||| |||||||||||||||| || ||||||||||| || |
|
|
| T |
27677483 |
atcctattattggagagacacttaatttccttaaagcacaaaggcaagtcaagggctctgagtggatagaagaaagggtatcaaagtatggtcctgtttt |
27677384 |
T |
|
| Q |
107 |
caaaacttccatattgggttcccctactgtgtttattattggccaacagggaaacaagtttgttcttggttcctcacatgatgtt |
191 |
Q |
| |
|
|||||| ||| | ||||||| ||||| |||||||||||||| ||||| |||||||||||| |||||||||||||| |||||||| |
|
|
| T |
27677383 |
caaaacctccttgctgggttctcctacagtgtttattattggacaacaaggaaacaagtttattcttggttcctcagatgatgtt |
27677299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University