View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5082_low_9 (Length: 460)
Name: NF5082_low_9
Description: NF5082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5082_low_9 |
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| [»] scaffold0172 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 351; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 19 - 377
Target Start/End: Complemental strand, 53415843 - 53415485
Alignment:
| Q |
19 |
cttttctctatcccgtacgatacatagatcacaatcacacattacacttgataattataatgtccaaagatgttaaggaagctgtttattacgcttcagt |
118 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53415843 |
cttttctctatcctgtacgatacatagatcacaatcacacattacacttgataattataatgtccaaagatgttaaggaagctgtttattacgcttcagt |
53415744 |
T |
|
| Q |
119 |
ttcaagttctttttgttcttcccatccgaactcgttagaggtggcttttcttttcttttcttgccctttccaaatctattttcagcttcttcaaatcagc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53415743 |
ttcaagttctttttgttcttcccatccgaactcgttagaggtggcttttcttatcttttcttgccctttccaaatctattttcagcttcttcaaatcagc |
53415644 |
T |
|
| Q |
219 |
ctacaattaaaaagcaagttagctccaagtatatgtttgcatgctctctaaatttaaaacaaaatgagccagtgacaagaaattcattcacaccaaggct |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53415643 |
ctacaattaaaaagcaagttagctccaagtatatgtttgcatgctctctaaatttaaaacaaaatgagccagtgacaagaaattcattcacaccaaggct |
53415544 |
T |
|
| Q |
319 |
tccaaattctaaagagtattatcgcctgaagttcatcaatcttttcattcaactttgaa |
377 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53415543 |
tccaaattctaaagagtattatcgcctgaagttcatcaatcttttcattcaactttgaa |
53415485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 58 - 377
Target Start/End: Complemental strand, 53412072 - 53411756
Alignment:
| Q |
58 |
cattacacttgataattataatgtccaaagatgttaaggaagctgtttattacgcttca-gtttcaagttctttttgttcttcccatccgaactcgttag |
156 |
Q |
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||||| |||||||||||||||||| |||||| |||||||||||| |||||||||||| | ||||||||| || |||||||| |||||||||||||| |
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| T |
53412072 |
cattatacttgataattataatgtgtaaagatactaaggaagctgtatattacgcttcaggattcaagttcctt---ttcttcccgtccgaactcgttag |
53411976 |
T |
|
| Q |
157 |
aggtggcttttcttttcttttcttgccctttccaaatctattttcagcttcttcaaatcagcctacaattaaaaagcaagttagctccaagtatatgttt |
256 |
Q |
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||||| ||||||||||||||||||| ||||||||||||||||| | ||||| |||||||||||||||||||||| | ||||||||||||| | |
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| T |
53411975 |
aggtg-----aattttcttttcttgcccttttcaaatctattttcagctccctcaaagaagcctacaattaaaaagcaagtaaaatccaagtatatgtct |
53411881 |
T |
|
| Q |
257 |
gcatgctctctaaatt----taaaacaaaatgagccagtgacaagaaattcattcacaccaaggcttccaaattctaaagagtattatcgcctgaagttc |
352 |
Q |
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||||| ||||||||| ||||| |||||||||||||||| ||||||||||| ||||||||| ||||||| |||||| ||||||||| |||||||||| |
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| T |
53411880 |
acatgccctctaaattaaaataaaataaaatgagccagtgacgagaaattcatttacaccaaggtttccaaactctaaatagtattatcacctgaagttc |
53411781 |
T |
|
| Q |
353 |
atcaatcttttcattcaactttgaa |
377 |
Q |
| |
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| ||||||||||||| ||||||||| |
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| T |
53411780 |
aacaatcttttcatttaactttgaa |
53411756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 20 - 377
Target Start/End: Original strand, 53366695 - 53367054
Alignment:
| Q |
20 |
ttttctctatcccgtacgatacatagatcacaatcacacattacac-------ttgataattataatgtccaaagatgttaaggaagctgtttattacgc |
112 |
Q |
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|||||||||||| ||| | |||||| ||||||||||||||||| | |||||||||||||||| |||||| |||||||| ||| |||||||| |
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| T |
53366695 |
ttttctctatcctgtaggttacataaatcacaatcacacattagtcattataattgataattataatgtgtaaagatactaaggaaggtgtatattacgc |
53366794 |
T |
|
| Q |
113 |
ttcagt-ttcaagttctttttgttcttcccatccgaactcgttagaggtggcttttcttttcttttcttgccctttccaaatctattttcagcttcttca |
211 |
Q |
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||||| ||||||||| |||| |||||| ||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||| | ||| |
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| T |
53366795 |
ttcaggattcaagttcctttt---cttcccgtccgaactcgttagaggtg-----acttttcttttcttgcctttttcaaatctattttcagctccctca |
53366886 |
T |
|
| Q |
212 |
aatcagcctacaattaaaaagcaagttagctccaagtatatgtttgcatgctctctaaatt---taaaacaaaatgagccagtgacaagaaattcattca |
308 |
Q |
| |
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| |||||| ||||||||||||||| || |||||| ||||| || ||||| | ||||||| |||| |||||||||||||||||||||||||||| | |
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| T |
53366887 |
gaaaagcctaaaattaaaaagcaagtcagatccaagaatatg-ttacatgcccactaaattaaaaaaaataaaatgagccagtgacaagaaattcattta |
53366985 |
T |
|
| Q |
309 |
caccaaggcttccaaattctaaagagtattatcgcctgaagttcatcaatcttttcattcaactttgaa |
377 |
Q |
| |
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|||||||| |||||||||||||| ||||||||| ||||||||||| ||||||||||||| || |||||| |
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| T |
53366986 |
caccaaggtttccaaattctaaatagtattatcacctgaagttcaacaatcttttcatttaattttgaa |
53367054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 396 - 448
Target Start/End: Complemental strand, 53415497 - 53415445
Alignment:
| Q |
396 |
attcaactttgaaatttgttcactgtgaatttttgaaacactacactgatgat |
448 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53415497 |
attcaactttgaaatttgttcactgtgaatttttgaaacactacactgatgat |
53415445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 92 - 373
Target Start/End: Complemental strand, 53318534 - 53318262
Alignment:
| Q |
92 |
taaggaagctgtttattacgcttcagt-ttcaagttctttttgttcttcccatccgaactcgttagaggtggcttttcttttcttttcttgccctttcca |
190 |
Q |
| |
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|||||||||||| ||||||||||||| || |||||| | ||| ||||| ||||||| | ||||||||||||||| |||| || |||||||| | |
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| T |
53318534 |
taaggaagctgtatattacgcttcaggattaaagttcctcctgtccttcctgtccgaacactttagaggtggcttttgttttttt-----gccctttcta |
53318440 |
T |
|
| Q |
191 |
aatctattttcagcttcttcaaatcagcctacaattaaaaagca----agttagctccaagtatatgtttgcatgctctctaaatttaaaacaaaatgag |
286 |
Q |
| |
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||||||||||||||| |||| ||| |||||||||||||||| | || |||||| ||||||||| || | | |||||||||| ||| || | || |
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| T |
53318439 |
aatctattttcagctccttctaatttgcctacaattaaaaagtaagacagctagctctaagtatatggtt-ttttccctctaaatttcaaataatacaag |
53318341 |
T |
|
| Q |
287 |
ccagtgacaagaaattcattcacaccaaggcttccaaattctaaagagtattatcgcctgaagttcatcaatcttttcattcaactt |
373 |
Q |
| |
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|||||||| |||||| |||||||||| ||| |||||||||| |||||| |||||||||| || |||||||| |||||||| |
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| T |
53318340 |
ccagtgacgagaaatccattcacacccaggtttccaaattc--------attatcacctgaagttcgtcgatcttttcgttcaactt |
53318262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 448
Target Start/End: Complemental strand, 53318269 - 53318218
Alignment:
| Q |
397 |
ttcaactttgaaatttgttcactgtgaatttttgaaacactacactgatgat |
448 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||||| ||||||| |
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|
| T |
53318269 |
ttcaacttcgaaatttgttcactgtgagattttgaaacactacgttgatgat |
53318218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 437
Target Start/End: Complemental strand, 53411764 - 53411727
Alignment:
| Q |
400 |
aactttgaaatttgttcactgtgaatttttgaaacact |
437 |
Q |
| |
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||||||||||||||| |||||||| ||||||||||||| |
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| T |
53411764 |
aactttgaaatttgtgcactgtgattttttgaaacact |
53411727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 173 - 377
Target Start/End: Complemental strand, 14923115 - 14922913
Alignment:
| Q |
173 |
cttttcttgccctttccaaatctattttcagcttcttcaaatcagcctacaattaaaaagcaagttagctccaagtatatgtttgcatgctctctaaatt |
272 |
Q |
| |
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||||| ||||||| || ||||| ||||||||| ||||||| |||||||||||| |||| || |||| | ||||||||||| ||||| ||||||||| |
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| T |
14923115 |
ctttttttgccctgtcgtaatctgttttcagctccttcaaaagagcctacaattacaaagt--gtcagcttcgagtatatgtttacatgccctctaaatt |
14923018 |
T |
|
| Q |
273 |
taaaacaaaatgagccagtgacaagaaattcattcacaccaaggcttccaaattctaaagagtattatcgcctgaagttcatcaatcttttcattcaact |
372 |
Q |
| |
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| |||||||||||||| |||| ||||||| || ||||||| || |||||||||||||||| ||||||| ||| |||||||||||||||||||||||||| |
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| T |
14923017 |
tcaaacaaaatgagccggtgaggagaaattgatccacaccatggtttccaaattctaaagaatattatcaccttaagttcatcaatcttttcattcaact |
14922918 |
T |
|
| Q |
373 |
ttgaa |
377 |
Q |
| |
|
||||| |
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|
| T |
14922917 |
ttgaa |
14922913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0172 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0172
Description:
Target: scaffold0172; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 2793 - 2844
Alignment:
| Q |
173 |
cttttcttgccctttccaaatctattttcagcttcttcaaatcagcctacaa |
224 |
Q |
| |
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|||| |||||||| |||||||||| |||||||| ||||| |||||||||||| |
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| T |
2793 |
ctttccttgccctgtccaaatctactttcagctccttcagatcagcctacaa |
2844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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