View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5083-Insertion-3 (Length: 868)

Name: NF5083-Insertion-3
Description: NF5083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5083-Insertion-3
NF5083-Insertion-3
[»] chr8 (5 HSPs)
chr8 (8-251)||(39862431-39862675)
chr8 (726-829)||(195906-196009)
chr8 (726-829)||(310743-310846)
chr8 (809-857)||(40450987-40451035)
chr8 (809-850)||(38660082-38660123)
[»] chr1 (10 HSPs)
chr1 (734-856)||(15982486-15982608)
chr1 (779-856)||(17050367-17050444)
chr1 (779-856)||(51606914-51606991)
chr1 (726-861)||(38688559-38688694)
chr1 (809-850)||(49420090-49420131)
chr1 (809-850)||(40647602-40647643)
chr1 (809-863)||(44948889-44948943)
chr1 (809-858)||(536736-536784)
chr1 (809-854)||(37825393-37825438)
chr1 (809-850)||(49420956-49420997)
[»] chr3 (12 HSPs)
chr3 (724-856)||(52757841-52757973)
chr3 (731-857)||(17026883-17027009)
chr3 (47-190)||(17027704-17027852)
chr3 (397-522)||(17027278-17027401)
chr3 (798-857)||(3283125-3283184)
chr3 (583-639)||(17027171-17027227)
chr3 (809-856)||(19691754-19691801)
chr3 (809-856)||(45297549-45297596)
chr3 (809-859)||(17591019-17591069)
chr3 (776-858)||(45807009-45807091)
chr3 (674-704)||(52757795-52757825)
chr3 (816-857)||(36232867-36232908)
[»] chr5 (2 HSPs)
chr5 (784-862)||(36219619-36219697)
chr5 (809-858)||(6006729-6006778)
[»] chr4 (4 HSPs)
chr4 (727-856)||(22649598-22649727)
chr4 (809-857)||(36013953-36014001)
chr4 (779-850)||(33046348-33046419)
chr4 (809-858)||(52077100-52077149)
[»] chr7 (2 HSPs)
chr7 (809-849)||(31276934-31276974)
chr7 (787-850)||(40740666-40740729)
[»] chr6 (1 HSPs)
chr6 (809-851)||(1462051-1462093)
[»] chr2 (1 HSPs)
chr2 (809-842)||(30544741-30544774)


Alignment Details
Target: chr8 (Bit Score: 184; Significance: 4e-99; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 39862675 - 39862431
Alignment:
Q  8 aatctccttcctcttcttaccttcacttcccaatattttaatatgtattttttctctaaccttcattgatattaaaacaaaaattcatacgaccataatt 107  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||     
T  39862675 aatctccttcctcttcttaccttcacttcccaatattttagtatgtattttttctcacaccttcattgatattaaaacaaaaattcatacgaccataatc 39862576  T
Q  108 ggatctaggcataaatgaataattttagtgttgtttctggaaaacaagatcggtagtttcctctttcactctataaagtttca-nnnnnnnnnnngcgtg 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||    
T  39862575 ggatctaggcataaatgaataattttagtgttgtttctggaaaacaagatcggtagtttcctctttcactctataaagtttcattttttttttttgcgtg 39862476  T
Q  207 aaaataaagtgtgacagctgaaatttgagtttgaggacaaaatca 251  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  39862475 aaaataaagtgtgacagctgaaatttgagttttaggacaaaatca 39862431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 726 - 829
Target Start/End: Original strand, 195906 - 196009
Alignment:
Q  726 ccatcaaaaagtcattgcaattaccaagtaaacaatctcaatcattggagtataaaactaatatatctatggtcatgcttagcctttcccatcatgggaa 825  Q
    ||||||||||||||||  ||||| || ||||| ||||| || | ||| | ||||||| |||||||||||||||||||||||| ||||  |||||||||||    
T  195906 ccatcaaaaagtcattataattagcacgtaaataatctaaaccgttgaaatataaaattaatatatctatggtcatgcttagtctttttcatcatgggaa 196005  T
Q  826 acaa 829  Q
    ||||    
T  196006 acaa 196009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 726 - 829
Target Start/End: Original strand, 310743 - 310846
Alignment:
Q  726 ccatcaaaaagtcattgcaattaccaagtaaacaatctcaatcattggagtataaaactaatatatctatggtcatgcttagcctttcccatcatgggaa 825  Q
    ||||||||||||||||  ||||| || ||||| ||||| || | ||| | ||||||| |||||||||||||||||||||||| ||||  |||||||||||    
T  310743 ccatcaaaaagtcattataattagcacgtaaataatctaaaccgttgaaatataaaattaatatatctatggtcatgcttagtctttttcatcatgggaa 310842  T
Q  826 acaa 829  Q
    ||||    
T  310843 acaa 310846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 809 - 857
Target Start/End: Original strand, 40450987 - 40451035
Alignment:
Q  809 ctttcccatcatgggaaacaactttcatttcccatactaaactccacct 857  Q
    |||||||||  ||||||||||||| ||||||||||||||||| ||||||    
T  40450987 ctttcccatggtgggaaacaacttacatttcccatactaaaccccacct 40451035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 809 - 850
Target Start/End: Complemental strand, 38660123 - 38660082
Alignment:
Q  809 ctttcccatcatgggaaacaactttcatttcccatactaaac 850  Q
    ||||||||||| |||||||||||| | |||||||||||||||    
T  38660123 ctttcccatcaagggaaacaacttccctttcccatactaaac 38660082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 2e-36; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 734 - 856
Target Start/End: Complemental strand, 15982608 - 15982486
Alignment:
Q  734 aagtcattgcaattaccaagtaaacaatctcaatcattggagtataaaactaatatatctatggtcatgcttagcctttcccatcatgggaaacaacttt 833  Q
    |||||||| |||||| || |||||||||||||||||||| | ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  15982608 aagtcattacaattatcaggtaaacaatctcaatcattgaaatataatactattatatctatggtcatgcttagcctttcccatcatgggaaacaacttt 15982509  T
Q  834 catttcccatactaaactccacc 856  Q
    | ||| ||||  |||||||||||    
T  15982508 cctttgccatgataaactccacc 15982486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 779 - 856
Target Start/End: Original strand, 17050367 - 17050444
Alignment:
Q  779 aaaactaatatatctatggtcatgcttagcctttcccatcatgggaaacaactttcatttcccatactaaactccacc 856  Q
    |||| |||||||||||||||| |||||   ||||||||||||||||||||||||||||||||||  ||||||||||||    
T  17050367 aaaagtaatatatctatggtcctgcttcaactttcccatcatgggaaacaactttcatttcccaagctaaactccacc 17050444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 779 - 856
Target Start/End: Complemental strand, 51606991 - 51606914
Alignment:
Q  779 aaaactaatatatctatggtcatgcttagcctttcccatcatgggaaacaactttcatttcccatactaaactccacc 856  Q
    |||| |||||||||||||||| |||||   |||||||||||||||||||||||||| || ||||| ||||||||||||    
T  51606991 aaaagtaatatatctatggtcctgcttcaactttcccatcatgggaaacaactttccttgcccatgctaaactccacc 51606914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 726 - 861
Target Start/End: Original strand, 38688559 - 38688694
Alignment:
Q  726 ccatcaaaaagtcattgcaattaccaagtaaacaatctcaatcattggagtataaaactaatatatctatggtcatgcttagcctttcccatcatgggaa 825  Q
    |||||||||||| |||||| ||| || |||| ||||||||| | |   | |||||||  |||||||| ||||||  || ||  |||||||||||||||||    
T  38688559 ccatcaaaaagttattgcagttagcaggtaatcaatctcaaccctccaaatataaaatgaatatatcaatggtccagcataaactttcccatcatgggaa 38688658  T
Q  826 acaactttcatttcccatactaaactccaccttcaa 861  Q
    ||||||||  ||||||||| ||||| ||||| ||||    
T  38688659 acaacttttctttcccatattaaaccccaccatcaa 38688694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 809 - 850
Target Start/End: Complemental strand, 49420131 - 49420090
Alignment:
Q  809 ctttcccatcatgggaaacaactttcatttcccatactaaac 850  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  49420131 ctttcccatcatgggaaacaactttcctttcccatactaaac 49420090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 809 - 850
Target Start/End: Complemental strand, 40647643 - 40647602
Alignment:
Q  809 ctttcccatcatgggaaacaactttcatttcccatactaaac 850  Q
    ||||||||||||  ||||||||||||||||||||||||||||    
T  40647643 ctttcccatcataagaaacaactttcatttcccatactaaac 40647602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 809 - 863
Target Start/End: Original strand, 44948889 - 44948943
Alignment:
Q  809 ctttcccatcatgggaaacaactttcatttcccatactaaactccaccttcaaag 863  Q
    ||||||||| |||||||| ||||||| |||||||||||||||  |||| ||||||    
T  44948889 ctttcccattatgggaaagaactttcctttcccatactaaacctcaccatcaaag 44948943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 809 - 858
Target Start/End: Complemental strand, 536784 - 536736
Alignment:
Q  809 ctttcccatcatgggaaacaactttcatttcccatactaaactccacctt 858  Q
    |||| ||||||||||||| ||||||| ||||||||||||||| |||||||    
T  536784 cttttccatcatgggaaa-aactttcctttcccatactaaaccccacctt 536736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 809 - 854
Target Start/End: Original strand, 37825393 - 37825438
Alignment:
Q  809 ctttcccatcatgggaaacaactttcatttcccatactaaactcca 854  Q
    |||||||||||||||| | ||||||| ||| |||||||||||||||    
T  37825393 ctttcccatcatgggataaaactttccttttccatactaaactcca 37825438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 809 - 850
Target Start/End: Original strand, 49420956 - 49420997
Alignment:
Q  809 ctttcccatcatgggaaacaactttcatttcccatactaaac 850  Q
    |||| ||||||||||||||||||| | |||||||||||||||    
T  49420956 cttttccatcatgggaaacaacttccctttcccatactaaac 49420997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 7e-33; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 724 - 856
Target Start/End: Original strand, 52757841 - 52757973
Alignment:
Q  724 ttccatcaaaaagtcattgcaattaccaagtaaacaatctcaatcattggagtataaaactaatatatctatggtcatgcttagcctttcccatcatggg 823  Q
    ||||||||||||||||||||||||| ||  ||||||||||||| ||||  | || || |||| |||||||||||||||| ||||||||||||||||||      
T  52757841 ttccatcaaaaagtcattgcaattatcagataaacaatctcaaccattaaaataaaatactattatatctatggtcatgtttagcctttcccatcatgaa 52757940  T
Q  824 aaacaactttcatttcccatactaaactccacc 856  Q
    |||||| ||||||||||||| ||||||||||||    
T  52757941 aaacaaatttcatttcccatgctaaactccacc 52757973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 731 - 857
Target Start/End: Complemental strand, 17027009 - 17026883
Alignment:
Q  731 aaaaagtcattgcaattaccaagtaaacaatctcaatcattggagtataaaactaatatatctatggtcatgcttagcctttcccatcatgggaaacaac 830  Q
    ||||||||| |  |||||| | |||||||||||||| |||||   ||||||||||||||||||||||||||  |||||||||||||| ||||||||||||    
T  17027009 aaaaagtcactataattactaggtaaacaatctcaaccattgagatataaaactaatatatctatggtcatatttagcctttcccattatgggaaacaac 17026910  T
Q  831 tttcatttcccatactaaactccacct 857  Q
    |||| ||||||||  ||||||||||||    
T  17026909 tttcctttcccatgttaaactccacct 17026883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 47 - 190
Target Start/End: Complemental strand, 17027852 - 17027704
Alignment:
Q  47 aatatgtattttttctctaaccttcattgatattaaaacaaaaattcatacgaccataatt------ggatctaggcataaatgaataattttagtgttg 140  Q
    |||||||||||||||||  | |||||||| |||| ||| ||||||||||||||||||||||       ||||||| || ||||||||||||  |   |||    
T  17027852 aatatgtattttttctcacaacttcattgttattgaaataaaaattcatacgaccataattagattcagatctagacaaaaatgaataattgcaccattg 17027753  T
Q  141 tttctggaaaacaagatcggtagtttcctctttcactctataaagtttca 190  Q
    ||| ||| ||||||||||  ||| |||||||||| |||||||||||||||    
T  17027752 tttatgg-aaacaagatctatagcttcctctttctctctataaagtttca 17027704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 397 - 522
Target Start/End: Complemental strand, 17027401 - 17027278
Alignment:
Q  397 agatgaagttctggatttgtttgaaggtctggattaatgttggaagttatgagttttaatatattttttgacacaatgagttttaatatattaaatcttt 496  Q
    |||| ||||| ||| ||| | ||||||||| |||||||||| ||||||||||| |||  | | ||||||||  |||  |||||||||||||||||| |||    
T  17027401 agataaagttatgggtttctatgaaggtctagattaatgtttgaagttatgaggtttttttttttttttgag-caac-agttttaatatattaaattttt 17027304  T
Q  497 ataatctgagttttaaataattaaaa 522  Q
    ||||||||| |||| |||||||||||    
T  17027303 ataatctgaatttttaataattaaaa 17027278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 798 - 857
Target Start/End: Complemental strand, 3283184 - 3283125
Alignment:
Q  798 tcatgcttagcctttcccatcatgggaaacaactttcatttcccatactaaactccacct 857  Q
    ||||| |||||||||| |||||| | ||||||||| ||||||||||||||||||||||||    
T  3283184 tcatgtttagcctttctcatcatagaaaacaacttccatttcccatactaaactccacct 3283125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 583 - 639
Target Start/End: Complemental strand, 17027227 - 17027171
Alignment:
Q  583 cactggttttaatatatgtacatgatcaggcttaaatcttggtttatcccccaacaa 639  Q
    ||||||||||||||||||||  |||||||| |||||||||||||||| ||| |||||    
T  17027227 cactggttttaatatatgtatgtgatcaggattaaatcttggtttattccctaacaa 17027171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 809 - 856
Target Start/End: Original strand, 19691754 - 19691801
Alignment:
Q  809 ctttcccatcatgggaaacaactttcatttcccatactaaactccacc 856  Q
    ||||||||||||||||||||||||||  ||||||| ||||||||||||    
T  19691754 ctttcccatcatgggaaacaactttccattcccattctaaactccacc 19691801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 809 - 856
Target Start/End: Complemental strand, 45297596 - 45297549
Alignment:
Q  809 ctttcccatcatgggaaacaactttcatttcccatactaaactccacc 856  Q
    ||||||||| ||||||||||||| || ||||||||||||||| |||||    
T  45297596 ctttcccatgatgggaaacaactctcctttcccatactaaaccccacc 45297549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 809 - 859
Target Start/End: Original strand, 17591019 - 17591069
Alignment:
Q  809 ctttcccatcatgggaaacaactttcatttcccatactaaactccaccttc 859  Q
    |||||||||||||||| | ||||||| ||||||||| |||||| |||||||    
T  17591019 ctttcccatcatgggatagaactttcttttcccatattaaacttcaccttc 17591069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 776 - 858
Target Start/End: Original strand, 45807009 - 45807091
Alignment:
Q  776 tataaaactaatatatctatggtcatgcttagcctttcccatcatgggaaacaactttcatttcccatactaaactccacctt 858  Q
    ||||||| ||||||||| |||| | ||| |   |||||||||||| ||||||||||||  |||||||| |||||| |||||||    
T  45807009 tataaaattaatatatcaatggccctgcgtcaactttcccatcataggaaacaactttgctttcccattctaaaccccacctt 45807091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 674 - 704
Target Start/End: Original strand, 52757795 - 52757825
Alignment:
Q  674 aaaatgttatttaatgaattggtggggtcat 704  Q
    |||||||||||||||||||||||||||||||    
T  52757795 aaaatgttatttaatgaattggtggggtcat 52757825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 816 - 857
Target Start/End: Complemental strand, 36232908 - 36232867
Alignment:
Q  816 atcatgggaaacaactttcatttcccatactaaactccacct 857  Q
    ||||||||||| ||||||| ||||||||||||||| ||||||    
T  36232908 atcatgggaaagaactttcctttcccatactaaaccccacct 36232867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 784 - 862
Target Start/End: Complemental strand, 36219697 - 36219619
Alignment:
Q  784 taatatatctatggtcatgcttagcctttcccatcatgggaaacaactttcatttcccatactaaactccaccttcaaa 862  Q
    |||||||||||||||| |||||   |||| ||||||||||||| || |||  |||||||||||||||||||||| ||||    
T  36219697 taatatatctatggtcctgctttaacttttccatcatgggaaagaagttttctttcccatactaaactccacctgcaaa 36219619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 809 - 858
Target Start/End: Complemental strand, 6006778 - 6006729
Alignment:
Q  809 ctttcccatcatgggaaacaactttcatttcccatactaaactccacctt 858  Q
    |||||| |||||||||||||| || | |||||||| ||||||||||||||    
T  6006778 ctttcctatcatgggaaacaagttccctttcccatgctaaactccacctt 6006729  T

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Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 727 - 856
Target Start/End: Original strand, 22649598 - 22649727
Alignment:
Q  727 catcaaaaagtcattgcaattaccaagtaaacaatctcaatcattggagtataaaactaatatatctatggtcatgcttagcctttcccatcatgggaaa 826  Q
    ||||||||||| |||||| ||| || |||| ||||||||| | |   | |||||||  |||||||| ||||||  || ||  ||||||||||||||||||    
T  22649598 catcaaaaagttattgcagttagcaggtaatcaatctcaaccctccaaatataaaatgaatatatcaatggtccagcataaactttcccatcatgggaaa 22649697  T
Q  827 caactttcatttcccatactaaactccacc 856  Q
    |||| ||  ||||||||| ||||| |||||    
T  22649698 caacctttctttcccatattaaaccccacc 22649727  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 809 - 857
Target Start/End: Original strand, 36013953 - 36014001
Alignment:
Q  809 ctttcccatcatgggaaacaactttcatttcccatactaaactccacct 857  Q
    |||||||||  ||| |||||||||||||||||||| |||||||||||||    
T  36013953 ctttcccatggtggtaaacaactttcatttcccatgctaaactccacct 36014001  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 779 - 850
Target Start/End: Complemental strand, 33046419 - 33046348
Alignment:
Q  779 aaaactaatatatctatggtcatgcttagcctttcccatcatgggaaacaactttcatttcccatactaaac 850  Q
    |||||||||||||| | |||| ||| ||  ||||||||| | ||||||||| |||| |||||||||||||||    
T  33046419 aaaactaatatatcaacggtcttgcataaactttcccataaagggaaacaaatttcctttcccatactaaac 33046348  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 809 - 858
Target Start/End: Complemental strand, 52077149 - 52077100
Alignment:
Q  809 ctttcccatcatgggaaacaactttcatttcccatactaaactccacctt 858  Q
    |||||||||||||||||| |||| || ||||||||  |||||||||||||    
T  52077149 ctttcccatcatgggaaataactctcctttcccatgttaaactccacctt 52077100  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 809 - 849
Target Start/End: Complemental strand, 31276974 - 31276934
Alignment:
Q  809 ctttcccatcatgggaaacaactttcatttcccatactaaa 849  Q
    |||||||||||||||||| ||||||| ||||||||||||||    
T  31276974 ctttcccatcatgggaaagaactttcctttcccatactaaa 31276934  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 787 - 850
Target Start/End: Complemental strand, 40740729 - 40740666
Alignment:
Q  787 tatatctatggtcatgcttagcctttcccatcatgggaaacaactttcatttcccatactaaac 850  Q
    ||||||||||||| ||  |||  |||||||||||||||||||| |||| |||||||| ||||||    
T  40740729 tatatctatggtcctggatagattttcccatcatgggaaacaattttcctttcccatgctaaac 40740666  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 809 - 851
Target Start/End: Original strand, 1462051 - 1462093
Alignment:
Q  809 ctttcccatcatgggaaacaactttcatttcccatactaaact 851  Q
    |||||||||||||||||| || |||| ||||||||||||||||    
T  1462051 ctttcccatcatgggaaagaaatttcttttcccatactaaact 1462093  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 809 - 842
Target Start/End: Complemental strand, 30544774 - 30544741
Alignment:
Q  809 ctttcccatcatgggaaacaactttcatttccca 842  Q
    |||||||||||||||||||||||| |||||||||    
T  30544774 ctttcccatcatgggaaacaacttccatttccca 30544741  T

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