View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5083-Insertion-4 (Length: 469)
Name: NF5083-Insertion-4
Description: NF5083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5083-Insertion-4 |
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| [»] scaffold0244 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 8 - 338
Target Start/End: Original strand, 37665286 - 37665620
Alignment:
| Q |
8 |
acaatcacgaggagtatgcatatcactttatgtaggtccaccacatctatgacaagtataagaggtaagatgtcttgaaccgtgaaagacattggtaggg |
107 |
Q |
| |
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|||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
37665286 |
acaatcacgaggagcatgcatatcactttatgtagatccacaacatctatgacaagtataagaggtaagatgtcctgaaccgcgaaagacattggtaggg |
37665385 |
T |
|
| Q |
108 |
aggctagcatgcatcgccgacaaacaaaaatttcttagattttcagaaatcggtagcctccaagtctacctccaacaaataactggctctatttgttgag |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37665386 |
aggctagcatgcatcgccgacaaacaaaaatttcttagattttcagaaatcggtagcctccaagtctacctccaacaaataactggctctatttgttgag |
37665485 |
T |
|
| Q |
208 |
tcgttagattcgatctaaccac----ctatatccttaactagttgagtattaatcatttgaagaagtactccaaatgagttaatccttaatgtcatgaac |
303 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
37665486 |
tcgttagattcgatctaaccacctagctatatccttaactagttgagtattaatcatttgaagaagtactccaaatgagtttatccttaatgtcatgaac |
37665585 |
T |
|
| Q |
304 |
aatggtaatgctacgaattttagagaatttacatg |
338 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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|
| T |
37665586 |
aatggtaatgctacgaattttagagaatttacatg |
37665620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 8 - 317
Target Start/End: Complemental strand, 13451731 - 13451421
Alignment:
| Q |
8 |
acaatcacgaggagtatgcatatcactttatgtaggtccaccacatctatgacaag---tataagaggtaagatgtcttgaaccgtgaaagacattggta |
104 |
Q |
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| T |
13451731 |
acaatcacgaagagtatgcataccactttcaacatatgcaccacatttatgacaagaagtaccagaggtaagatgtcttgaaccaaagaaggcattcgta |
13451632 |
T |
|
| Q |
105 |
gggaggctagcatgcatcgccgacaaacaaaaatttcttagattttcagaaatcggtagcctccaagtctacctccaacaaataactggctctatttgtt |
204 |
Q |
| |
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||||| |||||||||||| | | | | ||||| ||||||||||| ||||| || ||||||| | || | |||||||||||||| || |||| ||||| |
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| T |
13451631 |
gggagactagcatgcatcccaagccagctaaaatgtcttagatttttagaaaccgatagcctctgaatccaactccaacaaataacaggttctaattgtt |
13451532 |
T |
|
| Q |
205 |
gagtcgttagattc-gatctaaccacctatatccttaactagttgagtattaatcatttgaagaagtactccaaatgagttaatccttaatgtcatgaac |
303 |
Q |
| |
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| ||||||||| ||| |||| |||||||||| |||||| |||| | | | |||||| | ||| | ||||||| ||| ||||| | |||||||| | |
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| T |
13451531 |
aa---gttagattctgatttaactacctatatccataactacctgagaactgaccatttggataagcaatccaaataagtctatcctcattgtcatgatc |
13451435 |
T |
|
| Q |
304 |
aatggtaatgctac |
317 |
Q |
| |
|
|||||||||||||| |
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| T |
13451434 |
aatggtaatgctac |
13451421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 46 - 321
Target Start/End: Original strand, 1260004 - 1260280
Alignment:
| Q |
46 |
caccacatctatgacaag---tataagaggtaagatgtcttgaaccgtgaaagacattggtagggaggctagcatgcatcgccgacaaacaaaaatttct |
142 |
Q |
| |
|
|||||||||| ||||||| ||| |||||||||||||| |||||| ||||| ||||| |||||||||||||||||||| || | ||||||||| ||| |
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| T |
1260004 |
caccacatctttgacaagatgtatcagaggtaagatgtcgtgaaccacgaaaggcattgatagggaggctagcatgcatcaccagccaacaaaaatgtct |
1260103 |
T |
|
| Q |
143 |
tagattttcagaaatcggtagcctccaagtctacctccaacaaataactggctctatttgttgagtcgttagatt-cgatctaaccacctatatccttaa |
241 |
Q |
| |
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|||||||||||||| | |||||||| || | ||||||||| ||||| |||||| ||||||| |||||||| |||| |||||||||||||| ||| |
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| T |
1260104 |
tagattttcagaaacttgaagcctccagatccaactccaacaattaactagctctacttgttga---gttagattatgatcaaaccacctatatccataa |
1260200 |
T |
|
| Q |
242 |
ctagttgagtattaatcatttgaagaagtactccaaatgagttaatccttaatgtcatgaacaatggtaatgctacgaat |
321 |
Q |
| |
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|||| |||||||| | |||||| ||||| ||| |||||||||| ||| | |||||||| ||||||||||||||||||| |
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|
| T |
1260201 |
ctagctgagtattgaccatttggagaagcacttcaaatgagtttatcttcggtgtcatgatcaatggtaatgctacgaat |
1260280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 61 - 208
Target Start/End: Complemental strand, 33509243 - 33509096
Alignment:
| Q |
61 |
aagtataagaggtaagatgtcttgaaccgtgaaagacattggtagggaggctagcatgcatcgccgacaaacaaaaatttcttagattttcagaaatcgg |
160 |
Q |
| |
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|||||| |||||||||||||| |||||| ||||| |||||||||||||||||||||||||| || | ||||||||| ||| ||||||||| ||| | | |
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| T |
33509243 |
aagtatcagaggtaagatgtcgtgaaccacgaaaggcattggtagggaggctagcatgcatcaccagccaacaaaaatgtctaagattttcataaaccag |
33509144 |
T |
|
| Q |
161 |
tagcctccaagtctacctccaacaaataactggctctatttgttgagt |
208 |
Q |
| |
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|||||| | || | ||||||||| |||||||||||| ||||||||| |
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| T |
33509143 |
aagcctctagatccaactccaacaattaactggctctacttgttgagt |
33509096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0244 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: scaffold0244
Description:
Target: scaffold0244; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 46 - 191
Target Start/End: Original strand, 8757 - 8905
Alignment:
| Q |
46 |
caccacatctatgacaa---gtataagaggtaagatgtcttgaaccgtgaaagacattggtagggaggctagcatgcatcgccgacaaacaaaaatttct |
142 |
Q |
| |
|
|||||||||| |||||| |||| |||||||||||||| |||||| ||||| ||||||||||||||| | |||||||| || || ||||||||| ||| |
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| T |
8757 |
caccacatctttgacaaaatgtatcagaggtaagatgtcgtgaaccacgaaaggcattggtagggaggccatcatgcatcaccaaccaacaaaaatgtct |
8856 |
T |
|
| Q |
143 |
tagattttcagaaatcggtagcctccaagtctacctccaacaaataact |
191 |
Q |
| |
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|||||||||||||| || ||||||||| || | ||||||||| ||||| |
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|
| T |
8857 |
tagattttcagaaactggaagcctccaaatccaactccaacaattaact |
8905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0244; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 210 - 317
Target Start/End: Original strand, 14852 - 14960
Alignment:
| Q |
210 |
gttagattc-gatctaaccacctatatccttaactagttgagtattaatcatttgaagaagtactccaaatgagttaatccttaatgtcatgaacaatgg |
308 |
Q |
| |
|
||||||||| |||| |||||||||||||| ||||||| |||||||| | |||||| ||||| |||||||||||||| ||||| |||||||| |||||| |
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|
| T |
14852 |
gttagattctgatcaaaccacctatatccataactagatgagtattgaccatttggagaagcactccaaatgagtttatcctcggtgtcatgatcaatgg |
14951 |
T |
|
| Q |
309 |
taatgctac |
317 |
Q |
| |
|
||||||||| |
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|
| T |
14952 |
taatgctac |
14960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 68 - 274
Target Start/End: Original strand, 40699163 - 40699367
Alignment:
| Q |
68 |
agaggtaagatgtcttgaaccgtgaaagacattggtagggaggctagcatgcatcgccgacaaacaaaaatttcttagattttcagaaatcggtagcctc |
167 |
Q |
| |
|
|||||||||||||| |||||| |||| ||||||||||||||||| |||||||| | | ||||||||| | |||||||||||||| | |||||| |
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|
| T |
40699163 |
agaggtaagatgtcgtgaaccaccaaaggcattggtagggaggctatcatgcatcttcatccaacaaaaatgccatagattttcagaaacttgaagcctc |
40699262 |
T |
|
| Q |
168 |
caagtctacctccaacaaataactggctctatttgttgagtcgttagattc-gatctaaccacctatatccttaactagttgagtattaatcatttgaag |
266 |
Q |
| |
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|| ||| | ||||||||| ||| | |||||| ||||||| ||||||||| ||||||||||||||||| | ||||||| ||| |||| | |||||| || |
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|
| T |
40699263 |
caggtccaactccaacaattaattagctctacttgttga---gttagattctgatctaaccacctatattcataactagctgaatattgaccatttggag |
40699359 |
T |
|
| Q |
267 |
aagtactc |
274 |
Q |
| |
|
||| |||| |
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|
| T |
40699360 |
aagcactc |
40699367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 216 - 301
Target Start/End: Complemental strand, 53910688 - 53910603
Alignment:
| Q |
216 |
ttcgatctaaccacctatatccttaactagttgagtattaatcatttgaagaagtactccaaatgagttaatccttaatgtcatga |
301 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||| ||| | |||||| ||||||||||||| ||||| |||||||||| |
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|
| T |
53910688 |
ttcgatctaaccacatatatcaataactagttgagtattggccatctaaagaagcactccaaatgagtctatcctcaatgtcatga |
53910603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 44922588 - 44922511
Alignment:
| Q |
8 |
acaatcacgaggagtatgcatatcactttatgtaggtccaccacatctatgacaag---tataagaggtaagatgtct |
82 |
Q |
| |
|
|||||||||| |||||||||||||||||| || | |||||||||||||||||| ||| ||||||||||||||| |
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|
| T |
44922588 |
acaatcacgaagagtatgcatatcactttcaacagattcaccacatctatgacaagaaatattagaggtaagatgtct |
44922511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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