View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5083-Insertion-5 (Length: 461)
Name: NF5083-Insertion-5
Description: NF5083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5083-Insertion-5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 8 - 461
Target Start/End: Complemental strand, 50777787 - 50777330
Alignment:
| Q |
8 |
catcatataaagccttttgttaaactgagttaatccaaatcaaattctaaagacatatatatatgccaaacagtacccatgcatcattcaattaaaaata |
107 |
Q |
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|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
50777787 |
catcatataaagccttttgtaaaactgagttagtccaaatcaaattctaaagacatatatat--gccaaacagtacccatgcatcattcaattaaaaata |
50777690 |
T |
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| Q |
108 |
aagattgttccttttaaataaaatataccaattattttcttcttcttcttctaatcatttaacaccgtgtttcattttaactgttaattttgacaaaact |
207 |
Q |
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| T |
50777689 |
aagattgttccttttaaagaaaatataccaattattttcttcttcttct---aatcatttaacaccatgtttcattttaactgttaattttgacaaaact |
50777593 |
T |
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| Q |
208 |
tatttgtttaatgatggattccatcagatggtcgaaaatagcccaatatttaccaggaagaacggacaatgaaataaaaaattattggagaactcgtgtt |
307 |
Q |
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| T |
50777592 |
tatttgtttaatgatggaatccatcagatggtcgaaaatagcccaatatttaccaggaagaacggacaatgaaataaaaaattattggagaactcgtgtt |
50777493 |
T |
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| Q |
308 |
caaaagcttgccaaacaactcaaatgcgacgtgaatagcaagcaattcaaggacaccatgcgctacctttggatgccaaggctagtcgaacgtattcaag |
407 |
Q |
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| T |
50777492 |
caaaagcttgccaaacaactcaaatgcgacgtgaatagcaagcaattcaaggacaccatgcgctacctttggatgccaaggctagtcgaacgtattcaag |
50777393 |
T |
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| Q |
408 |
ccgctgctgctg---------ccaccacaaccaccgcgaccaatacctcatacaataataacg |
461 |
Q |
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| T |
50777392 |
ccgccgctgctgccactaccaccaccacaaccaccgcgaccaatacctcatacaataataacg |
50777330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 9e-31; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 233 - 393
Target Start/End: Original strand, 12560218 - 12560378
Alignment:
| Q |
233 |
agatggtcgaaaatagcccaatatttaccaggaagaacggacaatgaaataaaaaattattggagaactcgtgttcaaaagcttgccaaacaactcaaat |
332 |
Q |
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| T |
12560218 |
agatggtctaaaattgctcaatacttaccgggaagaacagacaacgagatcaagaattattggagaacccgtgtccaaaaacatgccaaacaactcaaat |
12560317 |
T |
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| Q |
333 |
gcgacgtgaatagcaagcaattcaaggacaccatgcgctacctttggatgccaaggctagt |
393 |
Q |
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| T |
12560318 |
gtgacgtaaacagcaagcaatttaaagatgctatgcgatacctttggatgccaaggctagt |
12560378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 296
Target Start/End: Complemental strand, 2892319 - 2892280
Alignment:
| Q |
257 |
ttaccaggaagaacggacaatgaaataaaaaattattgga |
296 |
Q |
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| T |
2892319 |
ttaccaggaaggacggacaatgaaataaaaaactattgga |
2892280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 236 - 300
Target Start/End: Original strand, 38707183 - 38707247
Alignment:
| Q |
236 |
tggtcgaaaatagcccaatatttaccaggaagaacggacaatgaaataaaaaattattggagaac |
300 |
Q |
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| T |
38707183 |
tggtcgaaaattgcacaacatctaccaggtagaacggacaatgaaataaaaaactattggagaac |
38707247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 302
Target Start/End: Complemental strand, 17118287 - 17118241
Alignment:
| Q |
256 |
tttaccaggaagaacggacaatgaaataaaaaattattggagaactc |
302 |
Q |
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| T |
17118287 |
tttaccaggaagaacagacaatgaaataaagaattactggaggactc |
17118241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 300
Target Start/End: Original strand, 38720048 - 38720112
Alignment:
| Q |
236 |
tggtcgaaaatagcccaatatttaccaggaagaacggacaatgaaataaaaaattattggagaac |
300 |
Q |
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| T |
38720048 |
tggtctaaaatagcggaacaattaccgggaagaaccgacaatgaaataaagaactattggagaac |
38720112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 296
Target Start/End: Original strand, 39195672 - 39195708
Alignment:
| Q |
260 |
ccaggaagaacggacaatgaaataaaaaattattgga |
296 |
Q |
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| T |
39195672 |
ccaggaagaacggacaatgaaattaaaaatcattgga |
39195708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 296
Target Start/End: Original strand, 33379849 - 33379890
Alignment:
| Q |
255 |
atttaccaggaagaacggacaatgaaataaaaaattattgga |
296 |
Q |
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| T |
33379849 |
atttacctggaagaacggataatgaaataaaaaatcattgga |
33379890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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