View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5083-Insertion-9 (Length: 359)
Name: NF5083-Insertion-9
Description: NF5083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5083-Insertion-9 |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 8 - 352
Target Start/End: Original strand, 38648993 - 38649337
Alignment:
| Q |
8 |
agatgtgattggggagagagacttgtctgcacagatatgcgagaacaaagctgatattatgttgttacatccttaatgcttaattattggatcgatatga |
107 |
Q |
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| T |
38648993 |
agatgtgattggggagagagacttgtctgcacagatatgcgagaacaaagctgatattatgttgttacatccttaatgcttaattattggatcaatatga |
38649092 |
T |
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| Q |
108 |
gaaatgagtatataagacaaaaagcattgaattggcaaattaaaacataaaaaggagagaaaataagtttaattattccatcacagaaccaaacaaaaaa |
207 |
Q |
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| T |
38649093 |
gaaatgagtatataagacaaaaagcattgaattggcaaattaaaacataaaaaggagagaaaataagtttaattattccatcacagaaccaaaaaaaaaa |
38649192 |
T |
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| Q |
208 |
tccccaattcatacggtttaaaccctagcccccaaatccgagaaatcgaatgaatttttagagcaatcaataacagaacagattcaaataaccctagaca |
307 |
Q |
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| T |
38649193 |
tccccaattcatacggtttaaaccctagcccccaaatccgagaaatcgaatgaatttttagagcaatcaataacagaacagattcaaataaccctagaca |
38649292 |
T |
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| Q |
308 |
agaaacattgaataagaaaattaaaacgctaacccccaaatccaa |
352 |
Q |
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| T |
38649293 |
agaaacattgaataagaaaattaaaacgctaacccccaaatccaa |
38649337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 342
Target Start/End: Complemental strand, 28698390 - 28698344
Alignment:
| Q |
296 |
taaccctagacaagaaacattgaataagaaaattaaaacgctaaccc |
342 |
Q |
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| T |
28698390 |
taaccctagagaagaagcattgaataagaaaatgaaaaccctaaccc |
28698344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 333
Target Start/End: Complemental strand, 34168718 - 34168682
Alignment:
| Q |
297 |
aaccctagacaagaaacattgaataagaaaattaaaa |
333 |
Q |
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| T |
34168718 |
aaccctaaacaagaagcattgaataagaaaattaaaa |
34168682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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