View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5083_high_3 (Length: 354)
Name: NF5083_high_3
Description: NF5083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5083_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 140; Significance: 3e-73; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 123 - 330
Target Start/End: Complemental strand, 6568347 - 6568140
Alignment:
| Q |
123 |
taaaaataagtcatcaagtccagaacagtttcataaactactttctgtagggattcaaaccaatgttgttatttgtgttctgctaacttctgtaaagcaa |
222 |
Q |
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| T |
6568347 |
taaaaataagccatcaagtctagaacagtttcataaactactttttgtagggattcaaaccattgttgttatttttgtgctagtaacttctgtaaagcaa |
6568248 |
T |
|
| Q |
223 |
aggataaacaacaattcggtttttactgctatgttgtgttgttttcatcatattggacctcacttgcacaattgaaacgtgactgtacttgtgctcaaat |
322 |
Q |
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| T |
6568247 |
aggaacaacaaccctttggtttttactgctatgttgtgttgttttcatcatgttggatctcactcgcacaattgaaatgtgactgtacttgtgctcaaat |
6568148 |
T |
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| Q |
323 |
tctaataa |
330 |
Q |
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|||||||| |
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| T |
6568147 |
tctaataa |
6568140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 155 - 330
Target Start/End: Complemental strand, 6598515 - 6598340
Alignment:
| Q |
155 |
ataaactactttctgtagggattcaaaccaatgttgttatttgtgttctgctaacttctgtaaagcaaaggataaacaacaattcggtttttactgctat |
254 |
Q |
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|||| ||||||| ||||||||| ||||||| |||||||| || |||||| ||||||||||||||||||||| |||||| |||||||||||||||||| |
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| T |
6598515 |
ataagctactttttgtagggatccaaaccattgttgttaattttgttctagtaacttctgtaaagcaaaggaacaacaacccttcggtttttactgctat |
6598416 |
T |
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| Q |
255 |
gttgtgttgttttcatcatattggacctcacttgcacaattgaaacgtgactgtacttgtgctcaaattctaataa |
330 |
Q |
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| T |
6598415 |
gttgtgttgttttcatcatgttggacctcactagcacaattgaaatgtgactatacttgtgctcaaattctaataa |
6598340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 155 - 330
Target Start/End: Complemental strand, 6653189 - 6653015
Alignment:
| Q |
155 |
ataaactactttctgtagggattcaaaccaatgttgttatttgtgttctgctaacttctgtaaagcaaaggataaacaacaattcggtttttactgctat |
254 |
Q |
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| T |
6653189 |
ataagctactttttgtagggatttaaaccattgttgttaattttgttctagtaacctctgtaaagcaaaggaacaacaacccttcggtttttactgctat |
6653090 |
T |
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| Q |
255 |
gttgtgttgttttcatcatattggacctcacttgcacaattgaaacgtgactgtacttgtgctcaaattctaataa |
330 |
Q |
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| T |
6653089 |
gttgtcttgtttttatcatgttggatctcattagcacaattgaaatgtgactgt-cttgtgctaaaattctaataa |
6653015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 155 - 330
Target Start/End: Complemental strand, 6733589 - 6733415
Alignment:
| Q |
155 |
ataaactactttctgtagggattcaaaccaatgttgttatttgtgttctgctaacttctgtaaagcaaaggataaacaacaattcggtttttactgctat |
254 |
Q |
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| T |
6733589 |
ataagctactttttgtagggatttaaaccattgttgttaattttgttctagtaacctctgtaaagcaaaggaacaacaacccttcggtttttactgctat |
6733490 |
T |
|
| Q |
255 |
gttgtgttgttttcatcatattggacctcacttgcacaattgaaacgtgactgtacttgtgctcaaattctaataa |
330 |
Q |
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||||| ||||||| ||||| ||||| |||| | |||||||||||| |||||||| |||||||| |||||||||||| |
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| T |
6733489 |
gttgtcttgtttttatcatgttggatctcattagcacaattgaaatgtgactgt-cttgtgctaaaattctaataa |
6733415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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