View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5083_high_4 (Length: 331)
Name: NF5083_high_4
Description: NF5083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5083_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 12 - 316
Target Start/End: Complemental strand, 49764898 - 49764594
Alignment:
| Q |
12 |
catcatcagcctaagaaaattcatcaaaataaaagtgtttggatcccctattgttggtgtatgcatcagctctgagggatatctaaatagagaaaattgt |
111 |
Q |
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| T |
49764898 |
catcatcagcctaagaaaattcatcaaaataaaagtgtttggatcccttattgttggtgtatgcatcagctctgagggatatctaaatagagaaaattgt |
49764799 |
T |
|
| Q |
112 |
cactattcaatgtaggaattgggttatcaatttgtaaattaaagggtttccctctttataaacttactattactattcaatgtagtaggagttgggttat |
211 |
Q |
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| T |
49764798 |
cactattcaatgtaggaattgggttatcaatttgtaaaataaagggtttccctctttataaacttactatcactattcaatgtagtaggagttgggttat |
49764699 |
T |
|
| Q |
212 |
caatacttaatttttgaccaaataaaatcataacactcaataaattcggcaatacaaggaggaataaaaacaatgtagagagtagagaccaattcaggca |
311 |
Q |
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| T |
49764698 |
caatacttaatttttgaccaaataaaatcataacactcaataaattcggcaatacaaggaggaataaaaacaatgtagagagtagagaccaattcaggaa |
49764599 |
T |
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| Q |
312 |
ataac |
316 |
Q |
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||||| |
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| T |
49764598 |
ataac |
49764594 |
T |
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