View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5083_high_6 (Length: 289)
Name: NF5083_high_6
Description: NF5083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5083_high_6 |
 | |
|
| [»] scaffold0289 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 16 - 270
Target Start/End: Original strand, 19016855 - 19017111
Alignment:
| Q |
16 |
gacaaaatcgactaacacacataaacgaatgagtcgaagttcaaatcgatcacgacatctgatctaacaattttgacatttttacctgttaaatttggat |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
19016855 |
gacaaaatcgactaacacacataaacgaatgagtcaaagttcgaatcgatcacgacatctgatctaacaattttgacatttttacctattaaatttggat |
19016954 |
T |
|
| Q |
116 |
ttgtgttgtgtacaacgtcatgtatatttactacacgggattattccttgtcacgagcactaatttaatt-------taatgagtaattgatgaatcaaa |
208 |
Q |
| |
|
||||||||||| || ||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
19016955 |
-----ttgtgtacaacatcgtgtgtatttactacatgggattattccttgtcacgagcactaatttaatttaatgactaatgagtaattgatgaatcaaa |
19017049 |
T |
|
| Q |
209 |
tcactacgaataggaaagttaatcactacatgggatcttcattttcttttgtgtcaaatacc |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19017050 |
tcactacgaataggaaagttaatcactacatgggatcttcattttcttttgtgtcaaatacc |
19017111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0289 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0289
Description:
Target: scaffold0289; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 98
Target Start/End: Complemental strand, 6655 - 6618
Alignment:
| Q |
61 |
tcgatcacgacatctgatctaacaattttgacattttt |
98 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
6655 |
tcgagcacaacatctgatctaacaattttgacattttt |
6618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 21934224 - 21934268
Alignment:
| Q |
76 |
gatctaacaattttgacatttttacctgttaaatttggatttgtg |
120 |
Q |
| |
|
||||||||||||| |||||||||||| ||||| || ||||||||| |
|
|
| T |
21934224 |
gatctaacaatttcgacatttttaccagttaagttaggatttgtg |
21934268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University