View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5083_low_1 (Length: 537)

Name: NF5083_low_1
Description: NF5083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5083_low_1
NF5083_low_1
[»] chr1 (22 HSPs)
chr1 (19-527)||(46895827-46896338)
chr1 (305-425)||(19547034-19547154)
chr1 (324-423)||(34582657-34582756)
chr1 (339-425)||(18032190-18032276)
chr1 (288-413)||(14758572-14758697)
chr1 (326-425)||(44584056-44584155)
chr1 (312-413)||(26297716-26297820)
chr1 (317-402)||(26765978-26766063)
chr1 (325-420)||(38294014-38294110)
chr1 (326-425)||(14890492-14890590)
chr1 (312-413)||(30529367-30529468)
chr1 (288-425)||(44920219-44920356)
chr1 (326-425)||(14892041-14892139)
chr1 (323-425)||(18038894-18038996)
chr1 (331-413)||(41649899-41649981)
chr1 (372-417)||(9500924-9500969)
chr1 (369-425)||(26533765-26533821)
chr1 (66-130)||(28762156-28762220)
chr1 (348-425)||(6983018-6983095)
chr1 (360-425)||(25095610-25095675)
chr1 (315-379)||(46729219-46729283)
chr1 (356-425)||(36331618-36331687)
[»] chr5 (14 HSPs)
chr5 (305-422)||(11010248-11010365)
chr5 (324-422)||(40944271-40944369)
chr5 (285-418)||(42877252-42877385)
chr5 (306-425)||(248447-248567)
chr5 (317-393)||(18988786-18988862)
chr5 (329-410)||(22528740-22528821)
chr5 (288-411)||(16980752-16980876)
chr5 (370-425)||(26663636-26663691)
chr5 (370-425)||(26935231-26935286)
chr5 (324-425)||(35947644-35947745)
chr5 (324-425)||(42265437-42265538)
chr5 (357-413)||(4857273-4857329)
chr5 (336-384)||(14328455-14328503)
chr5 (325-393)||(15206500-15206568)
[»] chr3 (15 HSPs)
chr3 (283-418)||(21813119-21813254)
chr3 (323-425)||(29212701-29212803)
chr3 (329-425)||(36494176-36494273)
chr3 (304-425)||(40629093-40629214)
chr3 (317-413)||(49682180-49682276)
chr3 (323-413)||(32606385-32606475)
chr3 (324-425)||(7278169-7278270)
chr3 (340-413)||(39144981-39145054)
chr3 (335-406)||(3383356-3383427)
chr3 (331-406)||(46895927-46896002)
chr3 (370-425)||(53040470-53040525)
chr3 (355-413)||(31294383-31294441)
chr3 (372-425)||(2831548-2831601)
chr3 (345-414)||(25095464-25095533)
chr3 (317-413)||(3973826-3973922)
[»] chr8 (20 HSPs)
chr8 (326-425)||(12787849-12787948)
chr8 (323-425)||(10565346-10565448)
chr8 (326-425)||(44042538-44042637)
chr8 (323-425)||(4166496-4166598)
chr8 (324-413)||(4507917-4508006)
chr8 (324-425)||(24457828-24457929)
chr8 (323-402)||(6904192-6904271)
chr8 (284-413)||(20142403-20142532)
chr8 (312-392)||(14237162-14237242)
chr8 (358-409)||(39312194-39312245)
chr8 (324-425)||(34336477-34336578)
chr8 (317-413)||(33285922-33286018)
chr8 (285-413)||(43238106-43238234)
chr8 (315-422)||(41105993-41106100)
chr8 (313-364)||(41646611-41646662)
chr8 (335-413)||(32332866-32332944)
chr8 (322-420)||(40464410-40464508)
chr8 (360-425)||(5020092-5020157)
chr8 (498-527)||(14170420-14170449)
chr8 (371-415)||(2335799-2335843)
[»] chr4 (20 HSPs)
chr4 (324-425)||(46506326-46506429)
chr4 (326-425)||(19652634-19652733)
chr4 (324-413)||(7388788-7388877)
chr4 (312-413)||(38380471-38380572)
chr4 (288-413)||(38949027-38949152)
chr4 (335-406)||(40781425-40781496)
chr4 (322-413)||(32893024-32893115)
chr4 (339-425)||(24916382-24916468)
chr4 (324-409)||(5047221-5047306)
chr4 (317-414)||(41370165-41370262)
chr4 (317-425)||(49011880-49011988)
chr4 (370-425)||(30978698-30978753)
chr4 (340-418)||(23133068-23133146)
chr4 (339-409)||(31871074-31871144)
chr4 (323-393)||(36721589-36721659)
chr4 (355-413)||(40071322-40071380)
chr4 (326-399)||(40062309-40062382)
chr4 (331-400)||(50247943-50248012)
chr4 (335-419)||(23016237-23016321)
chr4 (325-425)||(40480175-40480275)
[»] scaffold0172 (1 HSPs)
scaffold0172 (306-413)||(13478-13585)
[»] chr2 (15 HSPs)
chr2 (312-413)||(32770762-32770863)
chr2 (326-425)||(27921891-27921991)
chr2 (305-424)||(18734354-18734473)
chr2 (312-413)||(32438074-32438175)
chr2 (323-421)||(11580424-11580522)
chr2 (312-424)||(36260429-36260541)
chr2 (371-414)||(25093866-25093909)
chr2 (324-425)||(29260331-29260432)
chr2 (373-425)||(29865825-29865877)
chr2 (324-379)||(7933341-7933396)
chr2 (354-413)||(11252722-11252781)
chr2 (335-425)||(8964393-8964483)
chr2 (331-425)||(9153486-9153579)
chr2 (331-401)||(33617966-33618036)
chr2 (315-413)||(33962938-33963036)
[»] chr6 (6 HSPs)
chr6 (325-425)||(5678476-5678576)
chr6 (306-425)||(10570928-10571047)
chr6 (331-425)||(6586428-6586522)
chr6 (328-392)||(1252754-1252818)
chr6 (327-392)||(1243372-1243437)
chr6 (348-393)||(7465510-7465555)
[»] chr7 (18 HSPs)
chr7 (305-425)||(6771838-6771958)
chr7 (315-413)||(3298231-3298329)
chr7 (284-413)||(44319819-44319948)
chr7 (348-425)||(36061530-36061607)
chr7 (371-420)||(39170331-39170380)
chr7 (326-425)||(24557734-24557833)
chr7 (315-410)||(31902744-31902839)
chr7 (331-425)||(34681693-34681787)
chr7 (324-413)||(6707891-6707980)
chr7 (324-425)||(17883317-17883418)
chr7 (348-425)||(22739463-22739540)
chr7 (324-425)||(26402786-26402887)
chr7 (328-425)||(41898255-41898352)
chr7 (366-413)||(2699270-2699317)
chr7 (341-425)||(5495991-5496075)
chr7 (326-425)||(6775232-6775331)
chr7 (499-527)||(7873508-7873536)
chr7 (361-409)||(38452188-38452236)
[»] scaffold0633 (1 HSPs)
scaffold0633 (331-413)||(5015-5097)
[»] scaffold0027 (1 HSPs)
scaffold0027 (312-418)||(122457-122563)
[»] scaffold0009 (1 HSPs)
scaffold0009 (347-402)||(25585-25640)
[»] scaffold0246 (1 HSPs)
scaffold0246 (325-425)||(18114-18214)
[»] scaffold0007 (1 HSPs)
scaffold0007 (497-525)||(201304-201332)


Alignment Details
Target: chr1 (Bit Score: 398; Significance: 0; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 19 - 527
Target Start/End: Complemental strand, 46896338 - 46895827
Alignment:
Q  19 gtattgtacattttttctactcatttctcgtagcttggactacgatcatttgaacagatgatgaaataaaaacactaatgacttattgattatttcatga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  46896338 gtattgtacattttttctactcatttctcgtagcttggactacaaccatttgaacagatgatgaaataaaaacactaatgacttattggttatttcatga 46896239  T
Q  119 agttatcctaattttagaaaataatacaacgatgttaattgaaaatgactacttggagaatacatttataagtagattcattttattttaaataaactag 218  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||    
T  46896238 agttatcctaattttagataataatacaacgatgttaattgaaaatgactacttcgagaatacatttataagtagattcattttattttaaataaattag 46896139  T
Q  219 ttttttggaaggagccttaaataaaatagtcgtcgctatgttgtcaactaagcatatttgtatattggaaaatgttaaggagttttctaaggtcattctt 318  Q
     |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||    
T  46896138 -tttttggaaggagctttaaataaaatagtcgtcgctatgttgtcaactaagcatatttgtatattgggaaatgttaatgagttttttaaggtcattctt 46896040  T
Q  319 tacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaa 418  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46896039 tacggactttagatagtaagtttttatagaaatttatgcattcaatgcatcggaaattgaaatattagactttttcaataaataatttcttaatttagaa 46895940  T
Q  419 tccttaac-agtaccttaagaacacctattaac---aaaacccttgtatatttcattgtcgctttgtaatcaatgnnnnnnntaaggcttaattgcagtt 514  Q
    || ||||| ||||||||| ||||||||||||||   ||||||||||||||||||||||||||||||||||||| |       ||||||||||||||||||    
T  46895939 tctttaacaagtaccttaggaacacctattaacaaaaaaacccttgtatatttcattgtcgctttgtaatcaacgaaaaaaataaggcttaattgcagtt 46895840  T
Q  515 ttgaccccctatg 527  Q
    ||| |||||||||    
T  46895839 ttggccccctatg 46895827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 305 - 425
Target Start/End: Original strand, 19547034 - 19547154
Alignment:
Q  305 ctaaggtcattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataat 404  Q
    |||||| || |||||| |||||||| ||||||||||||||| |||| || ||||||||||| ||||| ||||||| |||| ||| |||||||| ||||||    
T  19547034 ctaagggcactctttaaggactttatatagtaagtttttatagaaacttgtgcattcaatgcatcgggaattgaagtattggacattttcaatgaataat 19547133  T
Q  405 ttcttaatttagaatccttaa 425  Q
    |||||| ||  ||||||||||    
T  19547134 ttcttacttgggaatccttaa 19547154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 324 - 423
Target Start/End: Complemental strand, 34582756 - 34582657
Alignment:
Q  324 actttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatcctt 423  Q
    ||||||||||||||||||||||  ||| |||||||||||||| ||| |||||||||  |||| ||||||||| | |||||||| |||||||| |||||||    
T  34582756 actttagatagtaagtttttatgaaaacttatgcattcaatgcatcagaaattgaagcattatactttttcattgaataattttttaatttaaaatcctt 34582657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 339 - 425
Target Start/End: Complemental strand, 18032276 - 18032190
Alignment:
Q  339 tttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa 425  Q
    ||||||| |||| ||||||||| |||| |||||||||||||  |||| ||||||||||||||||||||||||||| |||||| ||||    
T  18032276 tttttatggaaacttatgcatttaatgcatcggaaattgaagcattaaactttttcaataaataatttcttaattcagaatctttaa 18032190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 288 - 413
Target Start/End: Complemental strand, 14758697 - 14758572
Alignment:
Q  288 aaatgttaaggagttttctaaggtcattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattaga 387  Q
    ||||||||| ||||  ||||||| || |||||| |||||||| ||||||| |||||||  ||| || ||||||||||| |||| |||||||||| ||| |    
T  14758697 aaatgttaacgagtgctctaaggacactctttaaggactttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaa 14758598  T
Q  388 ctttttcaataaataatttcttaatt 413  Q
    |||||| ||  |||||||||||||||    
T  14758597 cttttttaaggaataatttcttaatt 14758572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 326 - 425
Target Start/End: Original strand, 44584056 - 44584155
Alignment:
Q  326 tttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa 425  Q
    ||||||||||||||||||||  ||| || |||||| |||  || | ||||||||| ||||||||||||||| ||||| |||||||||||||| |||||||    
T  44584056 tttagatagtaagtttttatgaaaacttgtgcatttaatacattgaaaattgaaacattagactttttcaacaaatagtttcttaatttagattccttaa 44584155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 312 - 413
Target Start/End: Complemental strand, 26297820 - 26297716
Alignment:
Q  312 cattctttacggactttagatagtaagtttttattgaaatttatgca---ttcaatggatcggaaattgaaatattagactttttcaataaataatttct 408  Q
    ||||||||| |||||||||||||||||||||||| |||| || ||||   ||| ||| |||||||||||||||||||  |||||||||| |||| ||||     
T  26297820 cattctttaaggactttagatagtaagtttttatagaaacttgtgcattcttctatgcatcggaaattgaaatattaagctttttcaatgaatagtttca 26297721  T
Q  409 taatt 413  Q
    |||||    
T  26297720 taatt 26297716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 317 - 402
Target Start/End: Complemental strand, 26766063 - 26765978
Alignment:
Q  317 tttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaata 402  Q
    |||| |||||||||||||||||||| |||  ||| |||||||||||||  ||| ||||||||||||||| ||||||||||| ||||    
T  26766063 tttaaggactttagatagtaagtttatataaaaacttatgcattcaatccatcagaaattgaaatattaaactttttcaatgaata 26765978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 325 - 420
Target Start/End: Complemental strand, 38294110 - 38294014
Alignment:
Q  325 ctttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaata-ttagactttttcaataaataatttcttaatttagaatc 420  Q
    ||||| ||||||||||||||| |||| || ||||||||||| || ||||||| ||||| ||| |||||||| || || |||||||||||||||||||    
T  38294110 ctttaaatagtaagtttttatagaaacttgtgcattcaatgcattggaaattaaaatatttatactttttctatgaacaatttcttaatttagaatc 38294014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 326 - 425
Target Start/End: Original strand, 14890492 - 14890590
Alignment:
Q  326 tttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa 425  Q
    |||||||||||| |||  || ||||||| ||||||||||| ||||||||||||| |||||   ||||||||| |||||||| |||||| |||||||||||    
T  14890492 tttagatagtaaatttg-atagaaatttgtgcattcaatgtatcggaaattgaagtattaagttttttcaattaataattttttaattaagaatccttaa 14890590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 312 - 413
Target Start/End: Complemental strand, 30529468 - 30529367
Alignment:
Q  312 cattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaa 411  Q
    ||||||||| |||||||| ||||||| ||||||| |||| || |||||| |||| ||| ||||||||| | ||| | ||||||||  |||||||||||||    
T  30529468 cattctttaaggactttaaatagtaaatttttatggaaaattgtgcatttaatgcatcagaaattgaagtgttaaattttttcaaagaataatttcttaa 30529369  T
Q  412 tt 413  Q
    ||    
T  30529368 tt 30529367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 288 - 425
Target Start/End: Complemental strand, 44920356 - 44920219
Alignment:
Q  288 aaatgttaaggagttttctaaggtcattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattaga 387  Q
    ||||||||| ||||   |||||| || | |||| |||||| | ||||||| ||||||| |||| || ||||||||||| |||  |||||||| | ||| |    
T  44920356 aaatgttaacgagtgccctaagggcactttttaaggacttgaaatagtaaatttttatggaaaattgtgcattcaatgcatcataaattgaagtgttaaa 44920257  T
Q  388 ctttttcaataaataatttcttaatttagaatccttaa 425  Q
    |||||| ||| ||||||||||||||| |||| ||||||    
T  44920256 cttttttaatgaataatttcttaattgagaaaccttaa 44920219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 326 - 425
Target Start/End: Original strand, 14892041 - 14892139
Alignment:
Q  326 tttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa 425  Q
    |||||||||||| |||  || ||||||| || |||||||| ||||||||||||| |||||   ||||||||| |||||||| |||||| |||||||||||    
T  14892041 tttagatagtaaatttg-atagaaatttgtgtattcaatgtatcggaaattgaagtattaagttttttcaattaataattttttaattaagaatccttaa 14892139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 323 - 425
Target Start/End: Complemental strand, 18038996 - 18038894
Alignment:
Q  323 gactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatcct 422  Q
    ||||||||||| ||| |||||||  |||||| || |||||||| |||||||||||||  |||||| |||||||||  ||  |||||||||| ||||| ||    
T  18038996 gactttagataataattttttatgaaaatttgtgtattcaatgcatcggaaattgaagcattagattttttcaatgcattgtttcttaattcagaatact 18038897  T
Q  423 taa 425  Q
    |||    
T  18038896 taa 18038894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 331 - 413
Target Start/End: Complemental strand, 41649981 - 41649899
Alignment:
Q  331 atagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatt 413  Q
    ||||||| ||||||| |||| |||||||||||||| || |||||||||||| ||| ||||||| ||  |||||||| ||||||    
T  41649981 atagtaaatttttatggaaaattatgcattcaatgcatgggaaattgaaatgttaaacttttttaaggaataattttttaatt 41649899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 372 - 417
Target Start/End: Original strand, 9500924 - 9500969
Alignment:
Q  372 aaattgaaatattagactttttcaataaataatttcttaatttaga 417  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||    
T  9500924 aaattgaagtattagactttttcaataaatagtttcttaatttaga 9500969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 369 - 425
Target Start/End: Original strand, 26533765 - 26533821
Alignment:
Q  369 cggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa 425  Q
    ||||||||||||  |||||||||||||||  |||||||||||||| |||||||||||    
T  26533765 cggaaattgaaacgttagactttttcaattgataatttcttaattgagaatccttaa 26533821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 66 - 130
Target Start/End: Original strand, 28762156 - 28762220
Alignment:
Q  66 atttgaacagatgatgaaataaaaacactaatgacttattgattatttcatgaagttatcctaat 130  Q
    |||||| ||||||||||||||||| || ||||  ||||||||||||||||||||  |||||||||    
T  28762156 atttgagcagatgatgaaataaaaccattaattgcttattgattatttcatgaaactatcctaat 28762220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 348 - 425
Target Start/End: Original strand, 6983018 - 6983095
Alignment:
Q  348 aaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa 425  Q
    ||||||||| || ||||| || | ||||||||||||| |||| ||| ||| |||||||||||||||| |||| |||||    
T  6983018 aaatttatgtatccaatgcattgaaaattgaaatatttgactcttttaatgaataatttcttaatttggaatacttaa 6983095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 360 - 425
Target Start/End: Complemental strand, 25095675 - 25095610
Alignment:
Q  360 tcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa 425  Q
    |||||| |||| ||||||||||||| |||||||| |  ||||||||||||  ||||||||||||||    
T  25095675 tcaatgcatcgaaaattgaaatatttgacttttttatgaaataatttcttcttttagaatccttaa 25095610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 315 - 379
Target Start/End: Complemental strand, 46729283 - 46729219
Alignment:
Q  315 tctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaa 379  Q
    |||||| |||||||| ||||||| ||||||| |||| || ||||||||||| ||||||| |||||    
T  46729283 tctttaaggactttaaatagtaaatttttatggaaaattgtgcattcaatgcatcggaatttgaa 46729219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 425
Target Start/End: Original strand, 36331618 - 36331687
Alignment:
Q  356 gcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa 425  Q
    |||||||||| || | |||||||| ||||  |||||||||||||| | ||||||||||  ||||||||||    
T  36331618 gcattcaatgaattgaaaattgaattatttaactttttcaataaacattttcttaattaggaatccttaa 36331687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 305 - 422
Target Start/End: Complemental strand, 11010365 - 11010248
Alignment:
Q  305 ctaaggtcattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataat 404  Q
    |||||| |||| |||| |||||| |||||||| |||||||| |||| || || |||||||| ||| ||||||||| ||||||||||||||||| |||| |    
T  11010365 ctaagggcattttttaaggacttcagatagtatgtttttatggaaagttgtgtattcaatgcatcagaaattgaagtattagactttttcaatgaatagt 11010266  T
Q  405 ttcttaatttagaatcct 422  Q
    ||||||||||||||||||    
T  11010265 ttcttaatttagaatcct 11010248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 324 - 422
Target Start/End: Original strand, 40944271 - 40944369
Alignment:
Q  324 actttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatcct 422  Q
    |||||||||||||| ||||||| ||||||| | ||||||||| |||| ||||||||  |||| ||||||||||| ||||||||||||||||||||||||    
T  40944271 actttagatagtaaatttttatggaaatttgtacattcaatgcatcgaaaattgaagcattatactttttcaatgaataatttcttaatttagaatcct 40944369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 285 - 418
Target Start/End: Complemental strand, 42877385 - 42877252
Alignment:
Q  285 ggaaaatgttaaggagttttctaaggtcattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatatt 384  Q
    |||||||||||| |||| |||||||| || ||||||  ||||||| ||||||| ||||||| |||| || || |||||||  || | |||||||||| ||    
T  42877385 ggaaaatgttaacgagtattctaagggcactctttaaagactttaaatagtaaatttttatggaaaattgtgtattcaatacattgaaaattgaaatttt 42877286  T
Q  385 agactttttcaataaataatttcttaatttagaa 418  Q
    | |||||||  || |||||||||| |||| ||||    
T  42877285 aaacttttttcatgaataatttctcaattgagaa 42877252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 306 - 425
Target Start/End: Original strand, 248447 - 248567
Alignment:
Q  306 taaggtcattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagac-tttttcaataaataat 404  Q
    ||||| || |||||| |||||| | ||||||| ||||||| |||| || ||||||||||  ||||||||||||| | ||| || ||||| || |||||||    
T  248447 taagggcactctttaaggacttgaaatagtaaatttttatggaaaattgtgcattcaatacatcggaaattgaagtgttaaacttttttaaagaaataat 248546  T
Q  405 ttcttaatttagaatccttaa 425  Q
    ||||||||| |||| ||||||    
T  248547 ttcttaattgagaaaccttaa 248567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 393
Target Start/End: Complemental strand, 18988862 - 18988786
Alignment:
Q  317 tttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagacttttt 393  Q
    |||| |||| ||||||||||| |||||||  ||| |||||||||||||| || ||||||| || |||||||||||||    
T  18988862 tttaaggacattagatagtaaatttttatgaaaacttatgcattcaatgcattggaaatttaagtattagacttttt 18988786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 329 - 410
Target Start/End: Original strand, 22528740 - 22528821
Alignment:
Q  329 agatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttctta 410  Q
    |||| |||| |||||||  ||||||||| ||| |||| |||||||||||||  || | ||||||||||| ||||||||||||    
T  22528740 agattgtaaatttttatgaaaatttatgtatttaatgtatcggaaattgaagcatcaaactttttcaatgaataatttctta 22528821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 288 - 411
Target Start/End: Complemental strand, 16980876 - 16980752
Alignment:
Q  288 aaatgttaaggagttttctaaggtcattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattaga 387  Q
    ||||| ||| |||| | |||||| || ||||||  ||||||| ||||||  |||||||  ||| |||| ||||||||| ||||||||||||| | ||| |    
T  16980876 aaatgctaacgagtatcctaaggacactctttaaagactttaaatagtacatttttatgaaaaattatacattcaatgtatcggaaattgaagtgttaaa 16980777  T
Q  388 ctttttcaata-aataatttcttaa 411  Q
    |||| |||| | |||||||||||||    
T  16980776 ctttctcaaaagaataatttcttaa 16980752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 425
Target Start/End: Complemental strand, 26663691 - 26663636
Alignment:
Q  370 ggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa 425  Q
    |||||| |||||||| |||||||| || ||||||||||||| |||||||| |||||    
T  26663691 ggaaatcgaaatatttgacttttttaaaaaataatttcttattttagaatgcttaa 26663636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 425
Target Start/End: Complemental strand, 26935286 - 26935231
Alignment:
Q  370 ggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa 425  Q
    |||||| |||||||| |||||||| || ||||||||||||| |||||||| |||||    
T  26935286 ggaaatcgaaatatttgacttttttaaaaaataatttcttattttagaatgcttaa 26935231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 425
Target Start/End: Complemental strand, 35947745 - 35947644
Alignment:
Q  324 actttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatcctt 423  Q
    |||||| ||||||||  ||||| ||||||| || |||| ||| |||| ||||||||||||||   |||| |||| |||| |||||| ||| || ||||||    
T  35947745 actttaaatagtaagggtttatagaaatttgtgaattctatgcatcgaaaattgaaatattaagtttttccaatgaatagtttcttgattgagtatcctt 35947646  T
Q  424 aa 425  Q
    ||    
T  35947645 aa 35947644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 425
Target Start/End: Complemental strand, 42265538 - 42265437
Alignment:
Q  324 actttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatcctt 423  Q
    |||||| ||||||||||||| |  || |||||| | |||||| || | |||||||||| || |||||||| ||  |||||||| || ||| |||||||||    
T  42265538 actttatatagtaagtttttgtctaagtttatgaaatcaatgcattgaaaattgaaatttttgacttttttaaagaataatttttttattaagaatcctt 42265439  T
Q  424 aa 425  Q
    ||    
T  42265438 aa 42265437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 357 - 413
Target Start/End: Complemental strand, 4857329 - 4857273
Alignment:
Q  357 cattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatt 413  Q
    ||||||||| |||| ||||| |||| ||| ||||||||||  |||||||||||||||    
T  4857329 cattcaatgtatcgaaaattaaaatgttaaactttttcaaagaataatttcttaatt 4857273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 336 - 384
Target Start/End: Original strand, 14328455 - 14328503
Alignment:
Q  336 aagtttttattgaaatttatgcattcaatggatcggaaattgaaatatt 384  Q
    ||||||||||  |||||||||||||||||| |||| |||||||| ||||    
T  14328455 aagtttttataaaaatttatgcattcaatgaatcgaaaattgaattatt 14328503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 393
Target Start/End: Original strand, 15206500 - 15206568
Alignment:
Q  325 ctttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagacttttt 393  Q
    ||||| ||| ||| |||||||  |||||| ||||||||||| |||| |||||||| |||| ||||||||    
T  15206500 ctttaaataataattttttatgaaaatttgtgcattcaatgaatcgaaaattgaagtattggacttttt 15206568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 283 - 418
Target Start/End: Original strand, 21813119 - 21813254
Alignment:
Q  283 ttggaaaatgttaaggagttttctaaggtcattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaata 382  Q
    |||||||||||||| |||| | |||||| || |||||| ||| |||| ||||||| ||||||| |||| |||||||||||||| ||||||| || || |     
T  21813119 ttggaaaatgttaatgagtgtcctaagggcactctttaaggattttaaatagtaaatttttatggaaaattatgcattcaatgcatcggaatttaaagtg 21813218  T
Q  383 ttagactttttcaataaataatttcttaatttagaa 418  Q
    ||| ||||||||||| ||||||||||||||| ||||    
T  21813219 ttaaactttttcaatgaataatttcttaattgagaa 21813254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 323 - 425
Target Start/End: Complemental strand, 29212803 - 29212701
Alignment:
Q  323 gactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatcct 422  Q
    ||||||||||| ||| ||||||| |||| || ||||||||||  |||  ||||||||  |||||||||||||||| |||| |||||||||||| ||||||    
T  29212803 gactttagatattaaatttttatagaaacttgtgcattcaatacatcataaattgaagcattagactttttcaatgaatagtttcttaatttaaaatcct 29212704  T
Q  423 taa 425  Q
    |||    
T  29212703 taa 29212701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 329 - 425
Target Start/End: Complemental strand, 36494273 - 36494176
Alignment:
Q  329 agatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattaga-ctttttcaataaataatttcttaatttagaatccttaa 425  Q
    ||||||||||||||||| |||| || ||||||||||  || |||||||||| |||||||  ||||||||| |||| ||||||||||  ||||||||||    
T  36494273 agatagtaagtttttatggaaacttgtgcattcaatacattggaaattgaagtattagatttttttcaatgaatagtttcttaattgggaatccttaa 36494176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 304 - 425
Target Start/End: Complemental strand, 40629214 - 40629093
Alignment:
Q  304 tctaaggtcattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataa 403  Q
    ||||||| |||||||||   |||||||||| |||| ||||||  ||| || |||||| |||| ||| ||||||  || |||||| ||||||||||||||     
T  40629214 tctaagggcattctttaaaaactttagataataagattttataaaaacttgtgcatttaatgtatcagaaattagaacattagattttttcaataaatat 40629115  T
Q  404 tttcttaatttagaatccttaa 425  Q
    ||| |||||| |||||||||||    
T  40629114 ttttttaattgagaatccttaa 40629093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 317 - 413
Target Start/End: Complemental strand, 49682276 - 49682180
Alignment:
Q  317 tttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatt 413  Q
    |||| |||||||| ||||||| ||||||| |||| || |||||||||||  |||||||||||||| ||| ||||||| ||  |||||||| ||||||    
T  49682276 tttaaggactttaaatagtaaatttttatagaaaattgtgcattcaatgcttcggaaattgaaatgttaaacttttttaaggaataattttttaatt 49682180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 413
Target Start/End: Original strand, 32606385 - 32606475
Alignment:
Q  323 gactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatt 413  Q
    ||||||| ||| ||| |||||||  ||| |||||||||||||| ||||||||||||||| |||   |||||||| | ||||||| ||||||    
T  32606385 gactttaaataataaatttttatgaaaaattatgcattcaatgcatcggaaattgaaatgttaacttttttcaaaatataattttttaatt 32606475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 324 - 425
Target Start/End: Original strand, 7278169 - 7278270
Alignment:
Q  324 actttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatcctt 423  Q
    |||||| ||||||||||||||| |||| || |||||| |||| || |||||| |||||||||  |||||  ||| |||| |||| ||||| || ||||||    
T  7278169 actttaaatagtaagtttttatcgaaacttgtgcattgaatgcattggaaatcgaaatattaagcttttctaatgaatagtttcgtaattgagtatcctt 7278268  T
Q  424 aa 425  Q
    ||    
T  7278269 aa 7278270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 340 - 413
Target Start/End: Complemental strand, 39145054 - 39144981
Alignment:
Q  340 ttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatt 413  Q
    |||||| |||| |||||||||||||| ||||||||||||| | ||| | ||||| || ||| ||||||||||||    
T  39145054 ttttatagaaaattatgcattcaatgcatcggaaattgaagtgttaaaattttttaaaaaacaatttcttaatt 39144981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 406
Target Start/End: Complemental strand, 3383427 - 3383356
Alignment:
Q  335 taagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataattt 406  Q
    |||| ||||||||||||||||  |||||||| ||| ||||||||| |||| |||||||| ||| || |||||    
T  3383427 taagattttattgaaatttatatattcaatgtatcagaaattgaagtatttgacttttttaatgaacaattt 3383356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 406
Target Start/End: Original strand, 46895927 - 46896002
Alignment:
Q  331 atagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataattt 406  Q
    |||||||||||||||  |||||||||||||||||| |||  |||||||| | ||  ||||||||  ||||||||||    
T  46895927 atagtaagtttttataaaaatttatgcattcaatgcatcaaaaattgaagtctttaactttttctttaaataattt 46896002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 425
Target Start/End: Complemental strand, 53040525 - 53040470
Alignment:
Q  370 ggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa 425  Q
    |||||||||| |||| || ||||| ||  |||||||||||||||||||||||||||    
T  53040525 ggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttaa 53040470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 413
Target Start/End: Complemental strand, 31294441 - 31294383
Alignment:
Q  355 tgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatt 413  Q
    ||||||||||| |||||||||| || | ||| ||||||||||  |||||||||||||||    
T  31294441 tgcattcaatgcatcggaaattaaagtgttaaactttttcaaagaataatttcttaatt 31294383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 425
Target Start/End: Complemental strand, 2831601 - 2831548
Alignment:
Q  372 aaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa 425  Q
    ||||||||||||| |||||| | || |||||||||||| |||| ||||||||||    
T  2831601 aaattgaaatatttgactttattaaaaaataatttcttgatttggaatccttaa 2831548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 414
Target Start/End: Complemental strand, 25095533 - 25095464
Alignment:
Q  345 ttgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaattt 414  Q
    |||||||||||| |||||||| |||  |||||||| ||   || |||||||||||||||||| |||||||    
T  25095533 ttgaaatttatgtattcaatgaatcataaattgaagtaactgattttttcaataaataattttttaattt 25095464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 413
Target Start/End: Complemental strand, 3973922 - 3973826
Alignment:
Q  317 tttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatt 413  Q
    |||| |||||| | ||||||| ||||||| |||| || |||||| |||| |||||||||||||   ||  ||||||| ||  |||||||||||||||    
T  3973922 tttaaggacttgaaatagtaaatttttatggaaaattgtgcatttaatgcatcggaaattgaagcgttgaacttttttaaggaataatttcttaatt 3973826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 6e-23; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 326 - 425
Target Start/End: Complemental strand, 12787948 - 12787849
Alignment:
Q  326 tttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa 425  Q
    ||||||||||||||||||||  |||||| |||||| |||| || ||||||||||  |||| |||||||||||||||||||| |||||||||||| |||||    
T  12787948 tttagatagtaagtttttatgaaaatttgtgcatttaatgaattggaaattgaagcattatactttttcaataaataattttttaatttagaattcttaa 12787849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 323 - 425
Target Start/End: Complemental strand, 10565448 - 10565346
Alignment:
Q  323 gactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatcct 422  Q
    ||||||||||||||| ||||||| ||||||| ||||||||||  |||  ||||| || ||||||||||||||||| |||| |||||||||||||||| ||    
T  10565448 gactttagatagtaaatttttatggaaatttgtgcattcaatacatcaaaaattaaagtattagactttttcaatgaatagtttcttaatttagaattct 10565349  T
Q  423 taa 425  Q
    |||    
T  10565348 taa 10565346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 326 - 425
Target Start/End: Complemental strand, 44042637 - 44042538
Alignment:
Q  326 tttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa 425  Q
    |||| ||||||||||||||| ||||||| ||||||||||| || |||||||||| ||||  ||||||||||| |||| ||||||||||  ||||||||||    
T  44042637 tttaaatagtaagtttttatagaaatttgtgcattcaatgcattggaaattgaagtattgaactttttcaatgaatagtttcttaattatgaatccttaa 44042538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 323 - 425
Target Start/End: Complemental strand, 4166598 - 4166496
Alignment:
Q  323 gactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatcct 422  Q
    |||||||||||  |||||||||| |||| || ||||||||||| || |||||||||||||||  ||||||||||| ||||||||||| |||  |||||||    
T  4166598 gactttagatataaagtttttatggaaacttgtgcattcaatgtattggaaattgaaatattgaactttttcaatgaataatttcttgattatgaatcct 4166499  T
Q  423 taa 425  Q
    |||    
T  4166498 taa 4166496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 324 - 413
Target Start/End: Original strand, 4507917 - 4508006
Alignment:
Q  324 actttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatt 413  Q
    ||||||||| |||||||||||| |||| ||| ||||| |||| ||| ||||||||||||| |   |||||||||||||| ||||||||||    
T  4507917 actttagatggtaagtttttatggaaacttacgcatttaatgcatcagaaattgaaatatgatgttttttcaataaatagtttcttaatt 4508006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 324 - 425
Target Start/End: Complemental strand, 24457929 - 24457828
Alignment:
Q  324 actttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatcctt 423  Q
    |||||| |||||||||||||||  ||| || ||| || |||| ||  |||||||||| |||||||||||||||| |||| ||| |||||||||| |||||    
T  24457929 actttaaatagtaagtttttatgaaaacttgtgcttttaatgcatttgaaattgaaacattagactttttcaatgaatagttttttaatttagattcctt 24457830  T
Q  424 aa 425  Q
    ||    
T  24457829 aa 24457828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 323 - 402
Target Start/End: Complemental strand, 6904271 - 6904192
Alignment:
Q  323 gactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaata 402  Q
    ||||||||||||||| ||||||| |||| || ||| ||||||| |||||||||||||  |||| ||||||||||| ||||    
T  6904271 gactttagatagtaattttttatggaaacttgtgcgttcaatgcatcggaaattgaagcattaaactttttcaatgaata 6904192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 284 - 413
Target Start/End: Original strand, 20142403 - 20142532
Alignment:
Q  284 tggaaaatgttaaggagttttctaaggtcattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatat 383  Q
    ||||||||||||| |||| |||| ||  |||| |||| |||||||| ||| ||| ||||||| | || || |||||| |||| |||| ||||| || | |    
T  20142403 tggaaaatgttaacgagtattcttagagcattatttaaggactttaaataataaatttttatgggaaattgtgcatttaatgcatcgaaaattaaagtgt 20142502  T
Q  384 tagactttttcaataaataatttcttaatt 413  Q
    || ||||||| || ||||||||||||||||    
T  20142503 taaactttttaaaaaaataatttcttaatt 20142532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 312 - 392
Target Start/End: Complemental strand, 14237242 - 14237162
Alignment:
Q  312 cattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttt 392  Q
    ||||||||| |||||||| ||||||| ||||||| |||| || |||||| |||| ||||||||||||| | ||| ||||||    
T  14237242 cattctttaaggactttaaatagtaaatttttatggaaaattgtgcatttaatgcatcggaaattgaagtgttaaactttt 14237162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 358 - 409
Target Start/End: Original strand, 39312194 - 39312245
Alignment:
Q  358 attcaatggatcggaaattgaaatattagactttttcaataaataatttctt 409  Q
    |||||||| ||||||||||||| ||||| ||||||||||| |||||||||||    
T  39312194 attcaatgcatcggaaattgaagtattaaactttttcaatgaataatttctt 39312245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 324 - 425
Target Start/End: Original strand, 34336477 - 34336578
Alignment:
Q  324 actttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatcctt 423  Q
    |||||| ||||||||||||| |  || |||||| | |||||| || |||||||||| | || |||||||| ||  ||||||||||| ||| |||||||||    
T  34336477 actttaaatagtaagtttttgtcaaagtttatgaaatcaatgcattggaaattgaagtttttgacttttttaaagaataatttctttattaagaatcctt 34336576  T
Q  424 aa 425  Q
    ||    
T  34336577 aa 34336578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 413
Target Start/End: Original strand, 33285922 - 33286018
Alignment:
Q  317 tttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatt 413  Q
    |||| |||||||| ||||||| |||||||  ||| || || ||| |||  |||| |||||||||| ||| | |||||||| ||||||||||||||||    
T  33285922 tttaaggactttaaatagtaaatttttatgaaaaattgtgtatttaatacatcgaaaattgaaatgttaaattttttcaaaaaataatttcttaatt 33286018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 285 - 413
Target Start/End: Original strand, 43238106 - 43238234
Alignment:
Q  285 ggaaaatgttaaggagttttctaaggtcattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatatt 384  Q
    |||||||||||| ||||   |||||  || |||||| | |||||| ||||||| ||||||| |||| || | |||| |||| |||| |||||||| | ||    
T  43238106 ggaaaatgttaacgagtgccctaagtgcactctttaagaactttaaatagtaaatttttatggaaaattctacatttaatgcatcgaaaattgaagtgtt 43238205  T
Q  385 agactttttcaataaataatttcttaatt 413  Q
    | ||||||| ||  |||||||||||||||    
T  43238206 aaacttttttaaggaataatttcttaatt 43238234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 422
Target Start/End: Original strand, 41105993 - 41106100
Alignment:
Q  315 tctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaattt 414  Q
    |||||| |||| ||| || |||||||||||   ||| || || |||||||| || | |||||||| |||| |||||||| ||| | ||||||||||||||    
T  41105993 tctttaaggaccttaaatggtaagtttttacgaaaaattgtgaattcaatgcattgaaaattgaactatttgacttttttaatgattaatttcttaattt 41106092  T
Q  415 agaatcct 422  Q
     |||||||    
T  41106093 ggaatcct 41106100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 364
Target Start/End: Complemental strand, 41646662 - 41646611
Alignment:
Q  313 attctttacggactttagatagtaagtttttattgaaatttatgcattcaat 364  Q
    |||||||| ||||||||||||||||||||||||  ||| || ||||||||||    
T  41646662 attctttaaggactttagatagtaagtttttatgaaaacttgtgcattcaat 41646611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 335 - 413
Target Start/End: Complemental strand, 32332944 - 32332866
Alignment:
Q  335 taagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatt 413  Q
    |||||||||||  ||| |||| ||||||||| |||| |||| ||| ||||| || |||||||| |||||||| ||||||    
T  32332944 taagtttttatgaaaacttatacattcaatgcatcgaaaatcgaagtattaaacattttcaatgaataattttttaatt 32332866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 322 - 420
Target Start/End: Original strand, 40464410 - 40464508
Alignment:
Q  322 ggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatc 420  Q
    |||||||  ||||||| ||||||| | || || |||||||||   |||| |||||||||||||| || |||||||| |||| ||| |||||| ||||||    
T  40464410 ggactttgaatagtaaatttttatggtaacttgtgcattcaaaacatcgaaaattgaaatattaaacattttcaatgaatagttttttaattgagaatc 40464508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 425
Target Start/End: Original strand, 5020092 - 5020157
Alignment:
Q  360 tcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa 425  Q
    |||||| ||||||||||||||| || |||||||| |  |||| |||||||  ||||||||||||||    
T  5020092 tcaatgtatcggaaattgaaatctttgacttttttataaaattatttcttcttttagaatccttaa 5020157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 498 - 527
Target Start/End: Original strand, 14170420 - 14170449
Alignment:
Q  498 aaggcttaattgcagttttgaccccctatg 527  Q
    ||||||||||||||||||||||||||||||    
T  14170420 aaggcttaattgcagttttgaccccctatg 14170449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 415
Target Start/End: Original strand, 2335799 - 2335843
Alignment:
Q  371 gaaattgaaatattagactttttcaataaataatttcttaattta 415  Q
    ||||||||||||||  | ||||| |||||||||||||||||||||    
T  2335799 gaaattgaaatatttaatttttttaataaataatttcttaattta 2335843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 324 - 425
Target Start/End: Complemental strand, 46506429 - 46506326
Alignment:
Q  324 actttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattaga--ctttttcaataaataatttcttaatttagaatcc 421  Q
    ||||||||||||||| |||| | ||||||||| |||| |||| ||||||||||||| |||||||   |||||||||||||| |||||||||| |||||||    
T  46506429 actttagatagtaagcttttgtggaaatttatccatttaatgcatcggaaattgaagtattagattttttttcaataaatagtttcttaattaagaatcc 46506330  T
Q  422 ttaa 425  Q
    ||||    
T  46506329 ttaa 46506326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 326 - 425
Target Start/End: Complemental strand, 19652733 - 19652634
Alignment:
Q  326 tttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa 425  Q
    ||||||||||||||||||||  |||||| ||||||||||| || ||||||| || ||||| || |||||||| |||||| ||||||||||||| ||||||    
T  19652733 tttagatagtaagtttttatgaaaatttgtgcattcaatgcattggaaattaaactattatacattttcaatgaataatatcttaatttagaaaccttaa 19652634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 324 - 413
Target Start/End: Complemental strand, 7388877 - 7388788
Alignment:
Q  324 actttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatt 413  Q
    |||||||||||||| ||||||| |||| || |||||| |||| ||||||||||| || ||||||||||||||||  ||| ||||||||||    
T  7388877 actttagatagtaaatttttatggaaacttgtgcatttaatgcatcggaaattggaacattagactttttcaatggatattttcttaatt 7388788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 312 - 413
Target Start/End: Complemental strand, 38380572 - 38380471
Alignment:
Q  312 cattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaa 411  Q
    ||||||||| |||||||| ||||||| ||||||| |||| ||||||||| ||||  |||||||||||| | ||| ||||||||||  || ||||| ||||    
T  38380572 cattctttaaggactttaaatagtaaatttttatggaaaattatgcatttaatgcttcggaaattgaagtgttaaactttttcaaagaaaaatttattaa 38380473  T
Q  412 tt 413  Q
    ||    
T  38380472 tt 38380471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 288 - 413
Target Start/End: Original strand, 38949027 - 38949152
Alignment:
Q  288 aaatgttaaggagttttctaaggtcattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattaga 387  Q
    ||||||||| |||| || ||||| || |||||| |||||| | ||||||| |||||||  ||| || ||||||||||| ||||||||||||| | ||| |    
T  38949027 aaatgttaacgagtgttttaagggcactctttaaggacttgaaatagtaaatttttatgaaaaattgtgcattcaatgcatcggaaattgaagtgttaaa 38949126  T
Q  388 ctttttcaataaataatttcttaatt 413  Q
     ||||| || ||||||||| ||||||    
T  38949127 tttttttaagaaataattttttaatt 38949152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 335 - 406
Target Start/End: Original strand, 40781425 - 40781496
Alignment:
Q  335 taagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataattt 406  Q
    ||||||||||| ||||| ||||||||||||| ||| |||||| ||  |||| ||||||||||||||||||||    
T  40781425 taagtttttatggaaatctatgcattcaatgcatcagaaattaaagcattaaactttttcaataaataattt 40781496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 322 - 413
Target Start/End: Complemental strand, 32893115 - 32893024
Alignment:
Q  322 ggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatt 413  Q
    |||||||| |||||||  |||||| |||| || ||||||||||| |||| |||||||||| ||| |||||||  | |||||| |||||||||    
T  32893115 ggactttaaatagtaaacttttatagaaaattgtgcattcaatgcatcgaaaattgaaatgttaaactttttttaaaaataaattcttaatt 32893024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 425
Target Start/End: Original strand, 24916382 - 24916468
Alignment:
Q  339 tttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa 425  Q
    ||||||| |||| || || |||||||||||| | ||||||| |||| ||  |||||||| |||| |||||||||| |||||||||||    
T  24916382 tttttatagaaacttgtgtattcaatggatcaggaattgaagtattggatattttcaatgaatattttcttaattgagaatccttaa 24916468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 324 - 409
Target Start/End: Complemental strand, 5047306 - 5047221
Alignment:
Q  324 actttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttctt 409  Q
    |||||| ||||||||||||| || || |||||| | |||||| || |||||||||||| || |||||||  ||| |||||||||||    
T  5047306 actttaaatagtaagttttttttaaagtttatgaaatcaatgcattggaaattgaaatttttgacttttgtaatgaataatttctt 5047221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 317 - 414
Target Start/End: Original strand, 41370165 - 41370262
Alignment:
Q  317 tttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaattt 414  Q
    |||| |||||||  |||||||||||||||  |||||| || | |||||| || | |||||||||||||  |||||||  | |||||||||||||||||    
T  41370165 tttaaggactttgaatagtaagtttttatgaaaatttgtgtaatcaatgcattgaaaattgaaatatttaacttttttgagaaataatttcttaattt 41370262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 425
Target Start/End: Original strand, 49011880 - 49011988
Alignment:
Q  317 tttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttag 416  Q
    |||| |||||||| ||||||||||||| |  ||| || |||||| |||| |||| |||||||| ||||| ||||||| ||| ||||  ||||| ||| |     
T  49011880 tttaaggactttaaatagtaagtttttgtgaaaacttgtgcatttaatgcatcgaaaattgaagtattaaacttttttaatgaatagattcttgattaaa 49011979  T
Q  417 aatccttaa 425  Q
    |||||||||    
T  49011980 aatccttaa 49011988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 370 - 425
Target Start/End: Original strand, 30978698 - 30978753
Alignment:
Q  370 ggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa 425  Q
    |||||||||| |||| |||||||| ||||||| |||||||||||| |||| |||||    
T  30978698 ggaaattgaactatttgacttttttaataaatcatttcttaatttggaatgcttaa 30978753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 340 - 418
Target Start/End: Original strand, 23133068 - 23133146
Alignment:
Q  340 ttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaa 418  Q
    |||||| |||| || || |||||||| ||||||||||||| | ||| ||||||| ||  ||||||||||||||| ||||    
T  23133068 ttttatagaaaattgtgtattcaatgcatcggaaattgaagtgttaaacttttttaaggaataatttcttaattgagaa 23133146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 339 - 409
Target Start/End: Original strand, 31871074 - 31871144
Alignment:
Q  339 tttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttctt 409  Q
    ||||| || ||||||||| | |||||| ||||||||||||||||||  ||||||| |  ||||||||||||    
T  31871074 tttttttttaaatttatgtaatcaatgcatcggaaattgaaatattttacttttttataaaataatttctt 31871144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 323 - 393
Target Start/End: Original strand, 36721589 - 36721659
Alignment:
Q  323 gactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagacttttt 393  Q
    ||||||| ||||||||||||||| ||||||| || | |||||| || |  |||||||||||| ||||||||    
T  36721589 gactttaaatagtaagtttttatggaaatttgtgtaatcaatgcattgagaattgaaatatttgacttttt 36721659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 413
Target Start/End: Complemental strand, 40071380 - 40071322
Alignment:
Q  355 tgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatt 413  Q
    |||||||||||  | |||||||||| |||| ||||||||||||  ||||||||||||||    
T  40071380 tgcattcaatgcgttggaaattgaagtattggactttttcaatgcataatttcttaatt 40071322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 399
Target Start/End: Complemental strand, 40062382 - 40062309
Alignment:
Q  326 tttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataa 399  Q
    |||| ||| ||| ||||||| ||||||  ||||||||||| || ||||| |||||||||  |||||||||||||    
T  40062382 tttaaataataaatttttatagaaattcgtgcattcaatgcattggaaaatgaaatattgaactttttcaataa 40062309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 400
Target Start/End: Complemental strand, 50248012 - 50247943
Alignment:
Q  331 atagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaa 400  Q
    ||||||||||||||| |||||| ||| |||||||| || | ||||| || ||||  ||||||||||||||    
T  50248012 atagtaagtttttatagaaattaatgaattcaatgcattgaaaatttaactatttaactttttcaataaa 50247943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 335 - 419
Target Start/End: Original strand, 23016237 - 23016321
Alignment:
Q  335 taagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaat 419  Q
    |||||||||||  || | |||| |||||||| || |||||||||||| || ||||| || ||  |||||||||||||||| ||||    
T  23016237 taagtttttataaaagtctatgtattcaatgcattggaaattgaaatgtttgacttctttaaataataatttcttaatttggaat 23016321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 425
Target Start/End: Original strand, 40480175 - 40480275
Alignment:
Q  325 ctttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatcctta 424  Q
    ||||| |||||||||||||    || |||||| | |||||| ||||| |||||||||||| |||||||| |  | ||||||||||  ||||| |||||||    
T  40480175 ctttaaatagtaagttttttaaaaagtttatgtaatcaatgtatcgggaattgaaatatttgacttttttatgacataatttcttcttttagcatcctta 40480274  T
Q  425 a 425  Q
    |    
T  40480275 a 40480275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 306 - 413
Target Start/End: Complemental strand, 13585 - 13478
Alignment:
Q  306 taaggtcattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatt 405  Q
    ||||| || ||||||  ||||| |||||||| |||||||| |||| || ||||||||| | ||||||||||||| ||||||||||||||||| |||| ||    
T  13585 taagggcactctttaaagacttgagatagtaggtttttatggaaacttgtgcattcaaagcatcggaaattgaagtattagactttttcaatgaatagtt 13486  T
Q  406 tcttaatt 413  Q
    ||||||||    
T  13485 tcttaatt 13478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 312 - 413
Target Start/End: Original strand, 32770762 - 32770863
Alignment:
Q  312 cattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaa 411  Q
    ||||||||| ||||||||||||||||  |||||| |||||||||||  |||||| ||  ||||||||| |||||   |||||||||||||||||||||||    
T  32770762 cattctttaaggactttagatagtaaaattttatggaaatttatgcggtcaatgcattcgaaattgaagtattaagttttttcaataaataatttcttaa 32770861  T
Q  412 tt 413  Q
    ||    
T  32770862 tt 32770863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 326 - 425
Target Start/End: Complemental strand, 27921991 - 27921891
Alignment:
Q  326 tttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattaga-ctttttcaataaataatttcttaatttagaatcctta 424  Q
    |||||||| ||||||||||  ||||||||| ||||||||| ||   ||||||||||||||||  ||||| ||||||||||||||||||||||||| ||||    
T  27921991 tttagataataagtttttaaggaaatttatacattcaatgcatttaaaattgaaatattagaggttttttaataaataatttcttaatttagaatactta 27921892  T
Q  425 a 425  Q
    |    
T  27921891 a 27921891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 305 - 424
Target Start/End: Complemental strand, 18734473 - 18734354
Alignment:
Q  305 ctaaggtcattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataat 404  Q
    |||||| |||||| || |||||| | ||||||| |||||||  ||| || ||||||||||| ||||||||||||| | ||| ||||||| ||  ||||||    
T  18734473 ctaaggacattctctaaggacttgaaatagtaaatttttatgaaaaattgtgcattcaatgtatcggaaattgaagtgttaaacttttttaaggaataat 18734374  T
Q  405 ttcttaatttagaatcctta 424  Q
    ||||||||| |||| |||||    
T  18734373 ttcttaattgagaaacctta 18734354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 312 - 413
Target Start/End: Original strand, 32438074 - 32438175
Alignment:
Q  312 cattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaa 411  Q
    ||||||||| |||||||| ||||||| ||||||| |||| || |||||| |||| ||||||||||||| | ||| || |||||||  |||||||| ||||    
T  32438074 cattctttaaggactttaaatagtaaatttttatggaaaattgtgcatttaatgcatcggaaattgaagtgttaaaccttttcaaataataattttttaa 32438173  T
Q  412 tt 413  Q
    ||    
T  32438174 tt 32438175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 323 - 421
Target Start/End: Original strand, 11580424 - 11580522
Alignment:
Q  323 gactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatcc 421  Q
    ||||||||||||||||||||||| ||||  | || |||||||  |||  |||||||| |||||||||| || ||| |||||||| |||||| |||||||    
T  11580424 gactttagatagtaagtttttatggaaacatgtgtattcaatccatcaaaaattgaagtattagacttatttaatgaataattttttaattgagaatcc 11580522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 312 - 424
Target Start/End: Complemental strand, 36260541 - 36260429
Alignment:
Q  312 cattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaa 411  Q
    ||||||||  ||||||| |||||||| ||| |||  |||||| || ||| |||| ||| |||||||||  |||||||||||||||| ||||| |||||||    
T  36260541 cattctttgaggactttggatagtaaatttatataaaaatttgtgtatttaatgcatcagaaattgaagcattagactttttcaattaataacttcttaa 36260442  T
Q  412 tttagaatcctta 424  Q
     |  |||||||||    
T  36260441 atgggaatcctta 36260429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 371 - 414
Target Start/End: Complemental strand, 25093909 - 25093866
Alignment:
Q  371 gaaattgaaatattagactttttcaataaataatttcttaattt 414  Q
    |||||||||||||| |||||||| ||||||||||||||||||||    
T  25093909 gaaattgaaatatttgacttttttaataaataatttcttaattt 25093866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 324 - 425
Target Start/End: Original strand, 29260331 - 29260432
Alignment:
Q  324 actttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatcctt 423  Q
    ||||||||||||||||||||||  || |||  ||||| |||| |||| ||||||||  ||||   ||||| ||||| || |||||||||| |||||||||    
T  29260331 actttagatagtaagtttttatgaaagtttgagcatttaatgcatcgaaaattgaaggattaagttttttaaataattattttcttaattaagaatcctt 29260430  T
Q  424 aa 425  Q
    ||    
T  29260431 aa 29260432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 373 - 425
Target Start/End: Original strand, 29865825 - 29865877
Alignment:
Q  373 aattgaaatattagactttttcaataaataatttcttaatttagaatccttaa 425  Q
    |||||||||||| |||||||| ||  |||||||||||| ||||||||||||||    
T  29865825 aattgaaatattcgactttttaaaagaataatttcttattttagaatccttaa 29865877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 379
Target Start/End: Complemental strand, 7933396 - 7933341
Alignment:
Q  324 actttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaa 379  Q
    |||||| ||||||| |||||||  ||| |||||||||||||| |||||||||||||    
T  7933396 actttaaatagtaaatttttatgaaaaattatgcattcaatgcatcggaaattgaa 7933341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 413
Target Start/End: Original strand, 11252722 - 11252781
Alignment:
Q  354 atgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatt 413  Q
    |||||||||||| |||| |||||||| || |||||||||||||| || | ||||||||||    
T  11252722 atgcattcaatgtatcgaaaattgaagtagtagactttttcaattaaaagtttcttaatt 11252781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 335 - 425
Target Start/End: Complemental strand, 8964483 - 8964393
Alignment:
Q  335 taagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa 425  Q
    ||||| |||||  |||||| || | |||||| || |||||||||||||||  ||||||| ||  ||||||| ||||||||||||| |||||    
T  8964483 taagtatttatgaaaatttgtgtaatcaatgcattggaaattgaaatattttacttttttaaagaataattacttaatttagaatgcttaa 8964393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 331 - 425
Target Start/End: Original strand, 9153486 - 9153579
Alignment:
Q  331 atagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa 425  Q
    |||||||||||| ||  |||||| || |||||||| || |||||||||| | || | |||||| ||  |||||||||||||||| ||||||||||    
T  9153486 atagtaagtttt-ataaaaatttgtgtattcaatgcattggaaattgaagtgtttgccttttttaaagaataatttcttaatttggaatccttaa 9153579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 331 - 401
Target Start/End: Complemental strand, 33618036 - 33617966
Alignment:
Q  331 atagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaat 401  Q
    |||||||| |||||| ||||| | ||||||||||| || ||||||| |||||||  ||||||| |||||||    
T  33618036 atagtaagattttatagaaatatgtgcattcaatgcattggaaattaaaatatttaactttttaaataaat 33617966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 315 - 413
Target Start/End: Original strand, 33962938 - 33963036
Alignment:
Q  315 tctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatt 413  Q
    |||||| |||||||| ||| ||| |||||||  ||| || ||||||||||| || | |||||||| | ||| ||||||| ||  |||||||||||||||    
T  33962938 tctttaaggactttaaataataaatttttatgaaaaattgtgcattcaatgcattgaaaattgaagtgttaaacttttttaaagaataatttcttaatt 33963036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 325 - 425
Target Start/End: Original strand, 5678476 - 5678576
Alignment:
Q  325 ctttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatcctta 424  Q
    ||||||||||||| ||||||| |||||||||  |||||||| || | |||||||| ||||| ||||||| ||| ||||||||||||| |  |||||||||    
T  5678476 ctttagatagtaaatttttatagaaatttatatattcaatgtattgaaaattgaagtattaaacttttttaatgaataatttcttaactatgaatcctta 5678575  T
Q  425 a 425  Q
    |    
T  5678576 a 5678576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 306 - 425
Target Start/End: Original strand, 10570928 - 10571047
Alignment:
Q  306 taaggtcattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatt 405  Q
    ||||| || ||||||  |||||||  |||||| ||||||| ||||||| | ||||||||| |||  |||||||| ||||  || |||||||| |||| ||    
T  10570928 taaggacactctttaaagactttatttagtaaatttttatagaaatttgttcattcaatgcatcaaaaattgaagtattgaacattttcaatgaatagtt 10571027  T
Q  406 tcttaatttagaatccttaa 425  Q
    |||||||| |||||||||||    
T  10571028 tcttaattaagaatccttaa 10571047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 425
Target Start/End: Original strand, 6586428 - 6586522
Alignment:
Q  331 atagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa 425  Q
    ||||||| |||||||  |||||||||  ||||||| ||||||||||||| |||  |||||||||||  | ||||||| |||||||| || |||||    
T  6586428 atagtaactttttatgaaaatttatgttttcaatgcatcggaaattgaactatctgactttttcaaagattaatttcctaatttagtatgcttaa 6586522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 328 - 392
Target Start/End: Complemental strand, 1252818 - 1252754
Alignment:
Q  328 tagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttt 392  Q
    |||||| |||||||||||  ||||| |||||||||||| |||  |||||||| ||||||||||||    
T  1252818 tagatattaagtttttatcaaaattaatgcattcaatgcatcataaattgaagtattagactttt 1252754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 392
Target Start/End: Complemental strand, 1243437 - 1243372
Alignment:
Q  327 ttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttt 392  Q
    ||||||| ||||||||||   |||||||||||||||||| |||  |||||||| ||||||| ||||    
T  1243437 ttagatattaagtttttaccaaaatttatgcattcaatgcatcttaaattgaagtattagattttt 1243372  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 393
Target Start/End: Complemental strand, 7465555 - 7465510
Alignment:
Q  348 aaatttatgcattcaatggatcggaaattgaaatattagacttttt 393  Q
    ||||||||| | |||||| |||||||||||||||||| ||||||||    
T  7465555 aaatttatgtaatcaatgcatcggaaattgaaatatttgacttttt 7465510  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 305 - 425
Target Start/End: Complemental strand, 6771958 - 6771838
Alignment:
Q  305 ctaaggtcattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataat 404  Q
    |||||| || |||||| |||||||| ||||||| ||||||| |||| || ||||||||||  |||||||||||||||  |    ||||||||  ||||||    
T  6771958 ctaaggacactctttaaggactttaaatagtaaatttttatggaaaattgtgcattcaatatatcggaaattgaaatggtgagttttttcaaagaataat 6771859  T
Q  405 ttcttaatttagaatccttaa 425  Q
    ||||||||| |||| ||||||    
T  6771858 ttcttaattgagaaaccttaa 6771838  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 315 - 413
Target Start/End: Complemental strand, 3298329 - 3298231
Alignment:
Q  315 tctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatt 413  Q
    |||||| | |||||||||  ||| ||||||| |||| ||| |||||||||| ||| ||||||||||||| |  |||||||||| |||| ||||||||||    
T  3298329 tctttaagaactttagatgttaaatttttatggaaacttaagcattcaatgcatcagaaattgaaatatgaagctttttcaatgaatagtttcttaatt 3298231  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 284 - 413
Target Start/End: Original strand, 44319819 - 44319948
Alignment:
Q  284 tggaaaatgttaaggagttttctaaggtcattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatat 383  Q
    ||||||||||||| |||| |||| ||  |||| |||| |||||||| ||| ||| ||||||| | || || |||||| |||| |||| ||||| || | |    
T  44319819 tggaaaatgttaacgagtattcttagagcattatttaaggactttaaataataaatttttatgggaaattgtgcatttaatgcatcgaaaattaaagtgt 44319918  T
Q  384 tagactttttcaataaataatttcttaatt 413  Q
    || ||||||| || ||||||||||||||||    
T  44319919 taaactttttaaaaaaataatttcttaatt 44319948  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 348 - 425
Target Start/End: Original strand, 36061530 - 36061607
Alignment:
Q  348 aaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa 425  Q
    |||||| || |||||||| || |||||| | | |||| |||||||| |||||||||||||||  ||||||||||||||    
T  36061530 aaatttgtgtattcaatgcattggaaatagtagtatttgacttttttaataaataatttcttgctttagaatccttaa 36061607  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 371 - 420
Target Start/End: Complemental strand, 39170380 - 39170331
Alignment:
Q  371 gaaattgaaatattagactttttcaataaataatttcttaatttagaatc 420  Q
    |||||||||| |||| ||||||| ||||||||||||||||||||| ||||    
T  39170380 gaaattgaaacattaaactttttgaataaataatttcttaatttacaatc 39170331  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 326 - 425
Target Start/End: Complemental strand, 24557833 - 24557734
Alignment:
Q  326 tttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaattta-gaatcctta 424  Q
    |||||| ||||||||||| |  |||||  ||||| ||||| || | |||||||| ||||||||||||| |||||||||||| |||||| | |||||||||    
T  24557833 tttagaaagtaagtttttgtgtaaattg-tgcatacaatgtattgaaaattgaagtattagacttttttaataaataattttttaattgaggaatcctta 24557735  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 410
Target Start/End: Original strand, 31902744 - 31902839
Alignment:
Q  315 tctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttctta 410  Q
    |||||| |||||||| ||||||| ||||||| |||| || || | |||||| || | ||||||||||||| |||||| | ||  ||||||||||||    
T  31902744 tctttaaggactttaaatagtaaatttttatggaaaattgtgtagtcaatgtattgaaaattgaaatatttgactttcttaaggaataatttctta 31902839  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 331 - 425
Target Start/End: Complemental strand, 34681787 - 34681693
Alignment:
Q  331 atagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa 425  Q
    ||||||| |||||||  ||| || || ||| |||| || |||||||||| |||| |||||||  || |||||||||| ||||||||||| |||||    
T  34681787 atagtaactttttataaaaacttgtgtatttaatgcattggaaattgaactatttgacttttgtaaaaaataatttcctaatttagaatgcttaa 34681693  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 413
Target Start/End: Complemental strand, 6707980 - 6707891
Alignment:
Q  324 actttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatt 413  Q
    |||||| ||| |||| |||||| ||||||||| |||||| || |||  ||||||||||||||   |||| |||| || ||||||||||||    
T  6707980 actttacataataagattttatagaaatttatacattcagtgtatcaaaaattgaaatattaagtttttccaatgaacaatttcttaatt 6707891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 425
Target Start/End: Original strand, 17883317 - 17883418
Alignment:
Q  324 actttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatcctt 423  Q
    |||||| ||||||||||||| |  ||||||||| | ||||||  | ||||||| || | || |||||||| || |||||||||||| ||| | |||||||    
T  17883317 actttaaatagtaagtttttgtcaaaatttatgaaatcaatgcgttggaaattaaagtttttgacttttttaaaaaataatttctttattaaaaatcctt 17883416  T
Q  424 aa 425  Q
    ||    
T  17883417 aa 17883418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 425
Target Start/End: Original strand, 22739463 - 22739540
Alignment:
Q  348 aaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa 425  Q
    |||||| | ||||||||| |||| |||||||  ||| |||  |||| ||||||||||||||||||| | |||||||||    
T  22739463 aaatttgtacattcaatgcatcgaaaattgatgtatcagatatttttaataaataatttcttaattgaaaatccttaa 22739540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 425
Target Start/End: Original strand, 26402786 - 26402887
Alignment:
Q  324 actttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatcctt 423  Q
    |||||| ||||||||||||| |  ||||||||| | |||||| || | |||||||| | || |||||||| ||  ||||||||||| |||  ||||||||    
T  26402786 actttaaatagtaagtttttgtcaaaatttatgaaatcaatgtattgaaaattgaagtttttgacttttttaaggaataatttctttattaggaatcctt 26402885  T
Q  424 aa 425  Q
    ||    
T  26402886 aa 26402887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 425
Target Start/End: Complemental strand, 41898352 - 41898255
Alignment:
Q  328 tagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa 425  Q
    |||||| ||| || |||| |||| || | |||| |||| ||||||||||||| ||||  ||||||||||| || | |||||||||| | |||||||||    
T  41898352 tagataataaattgttatggaaacttgtacatttaatgcatcggaaattgaattattgaactttttcaatgaaaagtttcttaattgaaaatccttaa 41898255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 366 - 413
Target Start/End: Complemental strand, 2699317 - 2699270
Alignment:
Q  366 gatcggaaattgaaatattagac-tttttcaataaataatttcttaatt 413  Q
    |||||||||||||||||||| || |||||||| ||||||||||||||||    
T  2699317 gatcggaaattgaaatattaaacatttttcaa-aaataatttcttaatt 2699270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 341 - 425
Target Start/End: Original strand, 5495991 - 5496075
Alignment:
Q  341 tttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatccttaa 425  Q
    ||||| |||| || ||||||||||| |||| ||||| || | ||| || |||||||  ||||||||||||||| |||| ||||||    
T  5495991 tttatggaaagttgtgcattcaatgcatcgaaaattaaagtgttaaacattttcaaggaataatttcttaattgagaaaccttaa 5496075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 425
Target Start/End: Complemental strand, 6775331 - 6775232
Alignment:
Q  326 tttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaata-ttagactttttcaataaataatttcttaatttagaatcctta 424  Q
    |||| ||||||| | ||||| |||| || ||||||||||| |||||||||| ||||| | ||| ||||||||  |||||||| |||||| |||| |||||    
T  6775331 tttaaatagtaaatatttatggaaaattgtgcattcaatgcatcggaaattcaaatagtgaga-tttttcaaagaataatttattaattgagaaacctta 6775233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 499 - 527
Target Start/End: Original strand, 7873508 - 7873536
Alignment:
Q  499 aggcttaattgcagttttgaccccctatg 527  Q
    |||||||||||||||||||||||||||||    
T  7873508 aggcttaattgcagttttgaccccctatg 7873536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 409
Target Start/End: Complemental strand, 38452236 - 38452188
Alignment:
Q  361 caatggatcggaaattgaaatattagactttttcaataaataatttctt 409  Q
    ||||| |||||||||||||||||| |||||||| |  ||||||||||||    
T  38452236 caatgcatcggaaattgaaatatttgacttttttataaaataatttctt 38452188  T

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Target: scaffold0633 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0633
Description:

Target: scaffold0633; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 331 - 413
Target Start/End: Original strand, 5015 - 5097
Alignment:
Q  331 atagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatt 413  Q
    ||||||| ||||||| |||| |||||||||||||| || |||||||||||| ||| ||||||| ||  |||||||| ||||||    
T  5015 atagtaaatttttatggaaaattatgcattcaatgcatgggaaattgaaatgttaaacttttttaaggaataattttttaatt 5097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 312 - 418
Target Start/End: Original strand, 122457 - 122563
Alignment:
Q  312 cattctttacggactttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaa 411  Q
    ||||||||| ||| ||||  |||||| ||||||| |||| || |||||| |||| |||||||||| || | ||| ||||||||||  |||||||||||||    
T  122457 cattctttaaggattttaagtagtaattttttatggaaaattgtgcatttaatgcatcggaaattaaagtgttaaactttttcaaagaataatttcttaa 122556  T
Q  412 tttagaa 418  Q
    || ||||    
T  122557 ttgagaa 122563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 402
Target Start/End: Original strand, 25585 - 25640
Alignment:
Q  347 gaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaata 402  Q
    ||||||| | |||||| || |||| |||||||||||||||||| ||||||||||||    
T  25585 gaaatttgtacattcactgcatcgaaaattgaaatattagactctttcaataaata 25640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 425
Target Start/End: Original strand, 18114 - 18214
Alignment:
Q  325 ctttagatagtaagtttttattgaaatttatgcattcaatggatcggaaattgaaatattagactttttcaataaataatttcttaatttagaatcctta 424  Q
    ||||| |||||||||||||    || |||||| | |||||| ||||| |||||||||||| |||||||| |  | ||||||||||  ||||| |||||||    
T  18114 ctttaaatagtaagttttttaaaaagtttatgtaatcaatgtatcgggaattgaaatatttgacttttttatgacataatttcttcttttagcatcctta 18213  T
Q  425 a 425  Q
    |    
T  18214 a 18214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 497 - 525
Target Start/End: Original strand, 201304 - 201332
Alignment:
Q  497 taaggcttaattgcagttttgacccccta 525  Q
    |||||||||||||||||||||||||||||    
T  201304 taaggcttaattgcagttttgacccccta 201332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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