View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5083_low_3 (Length: 356)

Name: NF5083_low_3
Description: NF5083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5083_low_3
NF5083_low_3
[»] chr4 (12 HSPs)
chr4 (9-341)||(33334130-33334451)
chr4 (63-253)||(45976128-45976320)
chr4 (140-247)||(10317103-10317208)
chr4 (140-210)||(8892660-8892729)
chr4 (154-247)||(53722019-53722110)
chr4 (141-192)||(3770909-3770960)
chr4 (140-207)||(31670142-31670208)
chr4 (168-247)||(43683731-43683808)
chr4 (141-192)||(44147090-44147141)
chr4 (141-192)||(44151625-44151676)
chr4 (140-247)||(27186154-27186263)
chr4 (233-262)||(53785842-53785871)
[»] chr6 (11 HSPs)
chr6 (69-262)||(17159594-17159789)
chr6 (151-259)||(7888209-7888317)
chr6 (8-121)||(7888095-7888210)
chr6 (135-261)||(17163625-17163752)
chr6 (140-247)||(17096314-17096419)
chr6 (140-210)||(17895763-17895832)
chr6 (106-272)||(21417106-21417272)
chr6 (140-266)||(8320082-8320204)
chr6 (140-247)||(8315543-8315649)
chr6 (140-210)||(14531827-14531896)
chr6 (154-209)||(17779964-17780018)
[»] chr2 (9 HSPs)
chr2 (69-261)||(29767938-29768132)
chr2 (75-261)||(26440372-26440559)
chr2 (195-262)||(22558544-22558611)
chr2 (140-247)||(8050851-8050956)
chr2 (140-207)||(12999504-12999570)
chr2 (141-192)||(36670570-36670621)
chr2 (141-192)||(36675118-36675169)
chr2 (166-261)||(27403696-27403791)
chr2 (140-247)||(8055404-8055509)
[»] chr7 (10 HSPs)
chr7 (101-261)||(13828101-13828262)
chr7 (153-262)||(8674961-8675068)
chr7 (140-261)||(733706-733826)
chr7 (140-247)||(35705646-35705752)
chr7 (141-192)||(7940122-7940173)
chr7 (141-192)||(7944675-7944726)
chr7 (149-247)||(47419627-47419723)
chr7 (154-247)||(27761409-27761500)
chr7 (140-192)||(22901221-22901273)
chr7 (154-192)||(27756911-27756949)
[»] chr5 (16 HSPs)
chr5 (67-262)||(33823882-33824070)
chr5 (140-225)||(20830368-20830452)
chr5 (140-210)||(32486025-32486094)
chr5 (140-205)||(19502362-19502426)
chr5 (140-247)||(30695305-30695410)
chr5 (140-210)||(26336845-26336915)
chr5 (140-225)||(20808680-20808764)
chr5 (142-231)||(43384980-43385067)
chr5 (141-192)||(7099413-7099464)
chr5 (141-192)||(7103982-7104033)
chr5 (141-192)||(12018798-12018849)
chr5 (141-192)||(12023356-12023407)
chr5 (141-192)||(16794175-16794226)
chr5 (141-192)||(16798736-16798787)
chr5 (154-247)||(40371789-40371880)
chr5 (149-247)||(10277216-10277312)
[»] chr8 (13 HSPs)
chr8 (140-247)||(42234734-42234839)
chr8 (99-247)||(41949814-41949962)
chr8 (140-247)||(33071930-33072035)
chr8 (140-247)||(28644574-28644679)
chr8 (141-247)||(43807524-43807628)
chr8 (141-247)||(43812083-43812187)
chr8 (141-192)||(197723-197774)
chr8 (141-192)||(202241-202292)
chr8 (141-192)||(312560-312611)
chr8 (141-192)||(317078-317129)
chr8 (140-192)||(30405860-30405912)
chr8 (140-247)||(30410369-30410474)
chr8 (181-224)||(31474662-31474704)
[»] chr3 (12 HSPs)
chr3 (140-247)||(9697598-9697705)
chr3 (140-210)||(43547772-43547842)
chr3 (162-258)||(53353037-53353131)
chr3 (153-192)||(755895-755934)
chr3 (140-247)||(11004443-11004548)
chr3 (140-207)||(21847162-21847228)
chr3 (140-207)||(21850252-21850318)
chr3 (141-192)||(54171963-54172014)
chr3 (101-264)||(9105272-9105433)
chr3 (141-192)||(54167383-54167434)
chr3 (153-187)||(755824-755858)
chr3 (149-247)||(39399171-39399267)
[»] scaffold0440 (2 HSPs)
scaffold0440 (141-210)||(7555-7623)
scaffold0440 (141-192)||(3047-3098)
[»] chr1 (4 HSPs)
chr1 (154-269)||(16588532-16588643)
chr1 (142-247)||(43591863-43591966)
chr1 (149-247)||(10504448-10504544)
chr1 (140-192)||(39793896-39793948)
[»] scaffold0044 (2 HSPs)
scaffold0044 (141-192)||(44904-44955)
scaffold0044 (141-192)||(49484-49535)


Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 9 - 341
Target Start/End: Original strand, 33334130 - 33334451
Alignment:
Q  9 gagatgaaagcgtaagtgaatagaattgataaaatgaaatgtattattgagatatgaaaattgtacaaggaatgaacttataacaagcatgtgttaggtt 108  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33334130 gagaagaaagcgtaagtgaatagaattgataaaatgaaatgtattattgagatatgaaaattgtacaaggaatgaacttataacaagcatgtgttaggtt 33334229  T
Q  109 acttgaagcacaagtaaag-aacaaccctaactcttattttctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaatcaaagtgtgattaa 207  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||    
T  33334230 acttgaagcacaagtaaagtaacaaccctaactcttattttctaaactctaaccaacttgt------------aacaaactaaaatcaaagtgtgattaa 33334317  T
Q  208 tcaactaaacatgattatcactaatgtaaacttgaattaacaactaaactaacaataacaacattgttgaacccttgagagttgagtcattgctaagcga 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  33334318 tcaactaaacatgattatcactaatgtaaacttgaattaacaactaaactaacaataacaacattgttgaacccttgagagttgagccattgctaagcga 33334417  T
Q  308 aaaccattgaaaatggcgtaaaacttgaccaaca 341  Q
    ||||||||||||||||||||||||||||||||||    
T  33334418 aaaccattgaaaatggcgtaaaacttgaccaaca 33334451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 63 - 253
Target Start/End: Original strand, 45976128 - 45976320
Alignment:
Q  63 tgaaaattgtacaaggaatgaacttata-acaagcatgtgttaggttacttgaagcacaagtaaag-aacaaccctaactcttattttctaaa-ctctaa 159  Q
    |||||| |||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  45976128 tgaaaaatgtacaaggaatgagcttatatacaagcaagtgttaggttacttgaagcacaagtaaagtaacaaccctaactcttattttctaaaactctaa 45976227  T
Q  160 ccaacttgtaacaaacttcaaaacaaactaaaatcaaagtgtgattaatcaactaaacatgattatcactaatgtaaacttgaattaacaacta 253  Q
      ||||||||||||||||||||||||||||||| |||  ||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||    
T  45976228 aaaacttgtaacaaacttcaaaacaaactaaaa-caagatgtgattaatcaactaagcatgattaccactaatgtaaacttgaattaactacta 45976320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 140 - 247
Target Start/End: Original strand, 10317103 - 10317208
Alignment:
Q  140 tcttattttctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaatcaaagtgtgattaatcaactaaacatgattatcactaatgtaaact 239  Q
    |||||||| |||| ||||||| |||||||||||||||||| ||||||||| || ||||||||||||||||| || |   ||||||| |||||  ||||||    
T  10317103 tcttatttgctaacctctaacaaacttgtaacaaacttcataacaaactacaa-caaagtgtgattaatca-ctgattgtgattataactaaactaaact 10317200  T
Q  240 tgaattaa 247  Q
    ||||||||    
T  10317201 tgaattaa 10317208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 140 - 210
Target Start/End: Original strand, 8892660 - 8892729
Alignment:
Q  140 tcttattttctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaatcaaagtgtgattaatca 210  Q
    |||||||| |||| ||||||| || ||||||||||||||| |||||||||||| |||| ||||||||||||    
T  8892660 tcttatttgctaatctctaacaaatttgtaacaaacttcataacaaactaaaa-caaaatgtgattaatca 8892729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 247
Target Start/End: Complemental strand, 53722110 - 53722019
Alignment:
Q  154 ctctaaccaacttgtaacaaacttcaaaacaaactaaaatcaaagtgtgattaatcaactaaacatgattatcactaatgtaaacttgaattaa 247  Q
    ||||||| |||||||||||||||||| |||||||||||| |||| ||||||||| | ||| |   |||||||||||||  ||||||||||||||    
T  53722110 ctctaacaaacttgtaacaaacttcataacaaactaaaa-caaaatgtgattaa-ccactgattgtgattatcactaaactaaacttgaattaa 53722019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 192
Target Start/End: Complemental strand, 3770960 - 3770909
Alignment:
Q  141 cttattttctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaa 192  Q
    ||||||| |||| ||||||| |||||||||||||||||| ||||||||||||    
T  3770960 cttatttgctaacctctaacaaacttgtaacaaacttcataacaaactaaaa 3770909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 31670208 - 31670142
Alignment:
Q  140 tcttattttctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaatcaaagtgtgattaa 207  Q
    |||||| | |||| ||||||| |||||||||||||||||| |||||||||||| |||| |||||||||    
T  31670208 tcttatctgctaacctctaacaaacttgtaacaaacttcataacaaactaaaa-caaactgtgattaa 31670142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 247
Target Start/End: Original strand, 43683731 - 43683808
Alignment:
Q  168 taacaaacttcaaaacaaactaaaatcaaagtgtgattaatcaactaaacatgattatcactaatgtaaacttgaattaa 247  Q
    |||||||||||| |||||||||||| ||||||||||||||||| || |   |||||||||||||  ||||||||||||||    
T  43683731 taacaaacttcataacaaactaaaa-caaagtgtgattaatca-ctgattgtgattatcactaaaataaacttgaattaa 43683808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 192
Target Start/End: Complemental strand, 44147141 - 44147090
Alignment:
Q  141 cttattttctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaa 192  Q
    ||||||| |||| ||||||| |||||||||||||||||| ||||||||||||    
T  44147141 cttatttgctaacctctaacaaacttgtaacaaacttcataacaaactaaaa 44147090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 192
Target Start/End: Complemental strand, 44151676 - 44151625
Alignment:
Q  141 cttattttctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaa 192  Q
    ||||||| |||| ||||||| |||||||||||||||||| ||||||||||||    
T  44151676 cttatttgctaacctctaacaaacttgtaacaaacttcataacaaactaaaa 44151625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 247
Target Start/End: Complemental strand, 27186263 - 27186154
Alignment:
Q  140 tcttattttctaaactctaaccaacttgtaacaaacttcaaaac-aaact-aaaatcaaagtgtgattaatcaactaaacatgattatcact-aatgtaa 236  Q
    |||||||| |||| ||||||| |||||||||||||||||| ||| ||||| |||| |||| ||||||||||| |||||   ||||||||||| ||  |||    
T  27186263 tcttatttgctaacctctaacaaacttgtaacaaacttcataacaaaactaaaaaacaaaatgtgattaatc-actaattgtgattatcactaaaactaa 27186165  T
Q  237 acttgaattaa 247  Q
    |||||||||||    
T  27186164 acttgaattaa 27186154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 262
Target Start/End: Complemental strand, 53785871 - 53785842
Alignment:
Q  233 gtaaacttgaattaacaactaaactaacaa 262  Q
    ||||||||||||||||||||||||||||||    
T  53785871 gtaaacttgaattaacaactaaactaacaa 53785842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 106; Significance: 5e-53; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 69 - 262
Target Start/End: Complemental strand, 17159789 - 17159594
Alignment:
Q  69 ttgtacaaggaatgaacttata-acaagcatgtgttaggttacttgaagcacaagtaaagaacaaccctaactcttattttctaaact--ctaaccaact 165  Q
    ||||||||||||||| |||||| || |||| |||||| ||||||||||||||||||||  |||||| || |||||||||| ||||| |  ||||||||||    
T  17159789 ttgtacaaggaatgagcttatatacgagcaagtgttatgttacttgaagcacaagtaagtaacaactctgactcttatttcctaaaatttctaaccaact 17159690  T
Q  166 tgtaacaaacttcaaaacaaactaaaatcaaagtgtgattaatcaactaaacatgattatcactaatgtaaacttgaattaacaactaaactaacaa 262  Q
    |||||||||| |||||||||||||||| |||||| |||| |||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||    
T  17159689 tgtaacaaacgtcaaaacaaactaaaa-caaagtatgatcaatcaactaatcatgattatcactaatctaaacttgaattatcaactaaactaacaa 17159594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 151 - 259
Target Start/End: Original strand, 7888209 - 7888317
Alignment:
Q  151 aaactctaaccaacttgtaacaaacttcaaaacaaactaaaatcaaagtgtgattaatcaactaaacatgattatcactaatgtaaacttgaattaacaa 250  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7888209 aaactctaacaaagttgtaacaaacttcaaaacaaactaaaatcaaagtgtgattaatcaactaaacatgattatcactaatgtaaacttgaattaacaa 7888308  T
Q  251 ctaaactaa 259  Q
    |||||||||    
T  7888309 ctaaactaa 7888317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 8 - 121
Target Start/End: Original strand, 7888095 - 7888210
Alignment:
Q  8 tgagatgaaagcgtaagtgaatagaattgataaaatgaaatgtattattgagatatg-aaaattgtacaaggaatgaacttata-acaagcatgtgttag 105  Q
    ||||| ||||| | ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||    
T  7888095 tgagaagaaagagcaagtgaatagaattgataaaatgaattgtattattgagatatgaaaaattgtacaaggaatgagcttatatacaagcatgtgttag 7888194  T
Q  106 gttacttgaagcacaa 121  Q
    ||||||||||||||||    
T  7888195 gttacttgaagcacaa 7888210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 135 - 261
Target Start/End: Complemental strand, 17163752 - 17163625
Alignment:
Q  135 ctaactcttattttctaaac--tctaaccaacttgtaacaaacttcaaaacaaactaaaatcaaagtgtgattaatcaactaaacatgattatcactaat 232  Q
    ||||||||||||| |||||   |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| || ||| |||||||||    
T  17163752 ctaactcttatttcctaaaacttctaaccaacttgtaacaaacttcaaaacaaactaaaa-caaagtgtgatcaatcaactaatcacgatcatcactaat 17163654  T
Q  233 gtaaacttgaattaacaactaaactaaca 261  Q
     ||||||||||||| ||||||||||||||    
T  17163653 ctaaacttgaattatcaactaaactaaca 17163625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 140 - 247
Target Start/End: Original strand, 17096314 - 17096419
Alignment:
Q  140 tcttattttctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaatcaaagtgtgattaatcaactaaacatgattatcactaatgtaaact 239  Q
    |||||| | |||| ||||||| |||||||||||||||||| |||||||||||| |||| |||||||||||| || |   |||||||||||||  ||||||    
T  17096314 tcttatctgctaacctctaacaaacttgtaacaaacttcataacaaactaaaa-caaaatgtgattaatca-ctgattgtgattatcactaaactaaact 17096411  T
Q  240 tgaattaa 247  Q
    ||||||||    
T  17096412 tgaattaa 17096419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 140 - 210
Target Start/End: Original strand, 17895763 - 17895832
Alignment:
Q  140 tcttattttctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaatcaaagtgtgattaatca 210  Q
    |||||||| |||| ||||||| |||||||||||||||||| ||||||||||||| ||| ||||||||||||    
T  17895763 tcttatttgctaacctctaacaaacttgtaacaaacttcagaacaaactaaaat-aaaatgtgattaatca 17895832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 106 - 272
Target Start/End: Original strand, 21417106 - 21417272
Alignment:
Q  106 gttacttgaagcacaagtaaagaacaaccctaactcttattttctaaac--tctaaccaacttgtaacaaacttcaaaacaaactaaaatcaaagtgtga 203  Q
    ||||||||||||||||||||  |||| |  |||| |||||||  ||||   | ||||||||||||||||||||||||||| |||||||| |||||||| |    
T  21417106 gttacttgaagcacaagtaagtaacagctataacccttatttcttaaagcttgtaaccaacttgtaacaaacttcaaaac-aactaaaa-caaagtgtaa 21417203  T
Q  204 ttaatcaactaaacatgattatcactaatgtaaacttgaattaacaact-aaactaacaataacaacatt 272  Q
    | ||||| ||||  |||||||  |||||  | ||||||||||| ||||| ||||||||||||| ||||||    
T  21417204 tcaatcagctaattatgattaatactaaact-aacttgaattatcaactaaaactaacaataataacatt 21417272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 140 - 266
Target Start/End: Original strand, 8320082 - 8320204
Alignment:
Q  140 tcttattttctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaatcaaagtgtgattaatcaactaaacatgattatcactaatgtaaact 239  Q
    |||||| | |||| ||||||| |||||||||||||||||| |||||||||||| || | ||||||||| | ||| |   |||||||||||||  ||||||    
T  8320082 tcttatctactaacctctaacaaacttgtaacaaacttcataacaaactaaaa-catattgtgattaa-ccactgattgtgattatcactaaactaaact 8320179  T
Q  240 tgaattaacaactaaactaacaataac 266  Q
    |||||||| ||| ||||||||||||||    
T  8320180 tgaattaa-aac-aaactaacaataac 8320204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 247
Target Start/End: Original strand, 8315543 - 8315649
Alignment:
Q  140 tcttattttctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaatcaaagtgtgattaatcaactaaacatgattatcactaatgtaaact 239  Q
    |||||| | |||| ||||||| |||||||||||||||||| ||||||||||||  ||  ||||||||| | ||| |   |||||||||||||  ||||||    
T  8315543 tcttatctactaacctctaacaaacttgtaacaaacttcataacaaactaaaacaaacttgtgattaa-ccactgattgtgattatcactaaactaaact 8315641  T
Q  240 tgaattaa 247  Q
    ||||||||    
T  8315642 tgaattaa 8315649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 210
Target Start/End: Original strand, 14531827 - 14531896
Alignment:
Q  140 tcttattttctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaatcaaagtgtgattaatca 210  Q
    |||||||| |||| ||||||| ||| |||||||||||||| ||| |||||||| |||| ||||||||||||    
T  14531827 tcttatttgctaacctctaacaaacctgtaacaaacttcataacgaactaaaa-caaaatgtgattaatca 14531896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 154 - 209
Target Start/End: Complemental strand, 17780018 - 17779964
Alignment:
Q  154 ctctaaccaacttgtaacaaacttcaaaacaaactaaaatcaaagtgtgattaatc 209  Q
    ||||||| ||||| |||||||||||| |||||||||||| |||| |||||||||||    
T  17780018 ctctaacaaacttttaacaaacttcataacaaactaaaa-caaaatgtgattaatc 17779964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 5e-50; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 69 - 261
Target Start/End: Complemental strand, 29768132 - 29767938
Alignment:
Q  69 ttgtacaaggaatgaacttata-acaagcatgtgttaggttacttgaagcacaagtaaagaacaaccctaactcttattttctaaac--tctaaccaact 165  Q
    ||||||||||||||| |||||| |||||||  ||||| ||||||||||||||||||||  |||||| ||||||||||||| |||||   | |||||||||    
T  29768132 ttgtacaaggaatgagcttatatacaagcaattgttatgttacttgaagcacaagtaagtaacaactctaactcttatttcctaaaacttataaccaact 29768033  T
Q  166 tgtaacaaacttcaaaacaaactaaaatcaaagtgtgattaatcaactaaacatgattatcactaatgtaaacttgaattaacaactaaactaaca 261  Q
    |||||||||||| |||||||||||||| ||||||||||| |||||| ||| |||||||||||||||  ||||||||||||| ||||||||||||||    
T  29768032 tgtaacaaactttaaaacaaactaaaa-caaagtgtgatcaatcaattaatcatgattatcactaaactaaacttgaattatcaactaaactaaca 29767938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 75 - 261
Target Start/End: Complemental strand, 26440559 - 26440372
Alignment:
Q  75 aaggaatgaacttata-acaagcatgtgttaggttacttgaagcacaagtaaagaacaaccctaactcttattttctaaac--tctaaccaacttgtaac 171  Q
    ||||||||| |||||| ||||||| |||||| ||||||||||||||||||||  ||| ||  || ||||||||  |||||   |||||||||||||||||    
T  26440559 aaggaatgagcttatatacaagcaagtgttatgttacttgaagcacaagtaagtaactactttagctcttattcgctaaagcttctaaccaacttgtaac 26440460  T
Q  172 aaacttcaaaacaaactaaaatcaaagtgtgattaatcaactaaacatgattatcactaatgtaaacttgaattaacaactaaactaaca 261  Q
     ||||| ||||||||||||||| ||| |||||| |||||| ||| ||||||||| |||||  |||| |||||||| | | ||||||||||    
T  26440459 -aactttaaaacaaactaaaat-aaaatgtgatcaatcaaataatcatgattattactaaactaaatttgaattatccattaaactaaca 26440372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 195 - 262
Target Start/End: Original strand, 22558544 - 22558611
Alignment:
Q  195 aaagtgtgattaatcaactaaacatgattatcactaatgtaaacttgaattaacaactaaactaacaa 262  Q
    ||||||||||||| |||| |||||||||||||| |||||||||||||||||| ||| |||||||||||    
T  22558544 aaagtgtgattaaccaacaaaacatgattatcattaatgtaaacttgaattatcaattaaactaacaa 22558611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 247
Target Start/End: Complemental strand, 8050956 - 8050851
Alignment:
Q  140 tcttattttctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaatcaaagtgtgattaatcaactaaacatgattatcactaatgtaaact 239  Q
    |||||| | |||| ||||||| |||||||||||||||||| ||||||||||||| | | ||||||||| | ||| |   |||||||||||||  ||||||    
T  8050956 tcttatctactaacctctaacaaacttgtaacaaacttcataacaaactaaaat-agaatgtgattaa-ccactgattgtgattatcactaaactaaact 8050859  T
Q  240 tgaattaa 247  Q
    ||||||||    
T  8050858 tgaattaa 8050851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 207
Target Start/End: Original strand, 12999504 - 12999570
Alignment:
Q  140 tcttattttctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaatcaaagtgtgattaa 207  Q
    |||||| | |||| ||||||| |||||||||||||||||| |||||||||||| |||| |||||||||    
T  12999504 tcttatctgctaacctctaacaaacttgtaacaaacttcataacaaactaaaa-caaaatgtgattaa 12999570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 192
Target Start/End: Complemental strand, 36670621 - 36670570
Alignment:
Q  141 cttattttctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaa 192  Q
    ||||||| |||| ||||||| |||||||||||||||||| ||||||||||||    
T  36670621 cttatttgctaacctctaacaaacttgtaacaaacttcataacaaactaaaa 36670570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 192
Target Start/End: Complemental strand, 36675169 - 36675118
Alignment:
Q  141 cttattttctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaa 192  Q
    ||||||| |||| ||||||| |||||||||||||||||| ||||||||||||    
T  36675169 cttatttgctaacctctaacaaacttgtaacaaacttcataacaaactaaaa 36675118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 166 - 261
Target Start/End: Original strand, 27403696 - 27403791
Alignment:
Q  166 tgtaacaaacttcaaaacaaactaaaatcaaagtgtgattaat-caactaaacatgattatcactaatgtaaacttgaattaacaact-aaactaaca 261  Q
    ||||||||||||||||||||||||||| |||||||| || ||| || |||| |||||||| ||||||  | ||||||||||| ||||| |||||||||    
T  27403696 tgtaacaaacttcaaaacaaactaaaa-caaagtgtaatcaatccagctaatcatgattaacactaaact-aacttgaattatcaactgaaactaaca 27403791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 140 - 247
Target Start/End: Complemental strand, 8055509 - 8055404
Alignment:
Q  140 tcttattttctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaatcaaagtgtgattaatcaactaaacatgattatcactaatgtaaact 239  Q
    |||||| | |||| ||||||| |||||| ||||||||||| ||||||||||||| | | ||||||||| | ||| |   |||||||||||||  ||||||    
T  8055509 tcttatctactaacctctaacaaacttgcaacaaacttcataacaaactaaaat-agaatgtgattaa-ccactgattgtgattatcactaaactaaact 8055412  T
Q  240 tgaattaa 247  Q
    ||||||||    
T  8055411 tgaattaa 8055404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 101 - 261
Target Start/End: Original strand, 13828101 - 13828262
Alignment:
Q  101 gttaggttacttgaagcacaagtaaag-aaca-accctaactcttattttctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaatcaaag 198  Q
    |||||||  ||||||||||||| || | |||| ||||||||| |||||   || |||||||| |||||||||||||||||| ||||||| ||||| |||     
T  13828101 gttaggtagcttgaagcacaagcaatgtaacagaccctaactattattagatacactctaacaaacttgtaacaaacttcagaacaaac-aaaatgaaaa 13828199  T
Q  199 tgtgattaatcaactaaacatgattatcactaatgtaaacttgaattaacaactaaactaaca 261  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  13828200 tgtgattaaccaactaaacatgattatcactaaggtaaacttgaattaacaactagactaaca 13828262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 153 - 262
Target Start/End: Complemental strand, 8675068 - 8674961
Alignment:
Q  153 actctaaccaacttgtaacaaacttcaaaacaaactaaaatcaaagtgtgattaatcaactaaacatgattatcactaatgtaaacttgaattaacaact 252  Q
    |||||||| | || ||||||||||||||||||||||||     |||||||||||| ||  |||||||||||||||||||| |||||||||||||  |||     
T  8675068 actctaacaacctagtaacaaacttcaaaacaaactaactg--aagtgtgattaaccatttaaacatgattatcactaatctaaacttgaattagtaaca 8674971  T
Q  253 aaactaacaa 262  Q
    ||||||||||    
T  8674970 aaactaacaa 8674961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 140 - 261
Target Start/End: Original strand, 733706 - 733826
Alignment:
Q  140 tcttattttctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaatcaaagtgtgattaatcaactaaacatgattatcactaatgtaaact 239  Q
    |||||||| |||| ||||||| || |||||||||| |||| ||||||||||  | ||  ||||||||| ||  |||||||||||||||||||| ||||||    
T  733706 tcttatttgctaacctctaacaaaattgtaacaaatttcataacaaactaac-tgaatatgtgattaaccatttaaacatgattatcactaatctaaact 733804  T
Q  240 tgaattaacaactaaactaaca 261  Q
    |||||||  ||| |||||||||    
T  733805 tgaattactaacaaaactaaca 733826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 140 - 247
Target Start/End: Complemental strand, 35705752 - 35705646
Alignment:
Q  140 tcttattttctaaactctaaccaacttgtaacaaacttca-aaacaaactaaaatcaaagtgtgattaatcaactaaacatgattatcactaatgtaaac 238  Q
    |||||||| |||| ||||||| ||||||||||||||| || ||||||||||||| |||| |||||||||||| || |   |||||||||||||  |||||    
T  35705752 tcttatttgctaacctctaacaaacttgtaacaaactccataaacaaactaaaa-caaaatgtgattaatca-ctgattgtgattatcactaaactaaac 35705655  T
Q  239 ttgaattaa 247  Q
    |||||||||    
T  35705654 ttgaattaa 35705646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 192
Target Start/End: Original strand, 7940122 - 7940173
Alignment:
Q  141 cttattttctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaa 192  Q
    ||||||| |||| ||||||| |||||||||||||||||| ||||||||||||    
T  7940122 cttatttgctaacctctaacaaacttgtaacaaacttcataacaaactaaaa 7940173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 192
Target Start/End: Original strand, 7944675 - 7944726
Alignment:
Q  141 cttattttctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaa 192  Q
    ||||||| |||| ||||||| |||||||||||||||||| ||||||||||||    
T  7944675 cttatttgctaacctctaacaaacttgtaacaaacttcataacaaactaaaa 7944726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 247
Target Start/End: Original strand, 47419627 - 47419723
Alignment:
Q  149 ctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaatcaaagtgtgattaatcaactaaacatgattatcactaatgtaaacttgaattaa 247  Q
    |||| ||||||  |||||||||||||||||| |||||||||||| |||| ||||||||| | ||| |   |||||||||||||  ||||||||||||||    
T  47419627 ctaacctctaagaaacttgtaacaaacttcataacaaactaaaa-caaaatgtgattaa-ccactgattgtgattatcactaaactaaacttgaattaa 47419723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 154 - 247
Target Start/End: Complemental strand, 27761500 - 27761409
Alignment:
Q  154 ctctaaccaacttgtaacaaacttcaaaacaaactaaaatcaaagtgtgattaatcaactaaacatgattatcactaatgtaaacttgaattaa 247  Q
    ||||||| |||||||||||||||||| |||||||||||| || | ||||||||| | ||| |   |||||||||||||  ||||||||||||||    
T  27761500 ctctaacaaacttgtaacaaacttcataacaaactaaaa-cagaatgtgattaa-ccactgattgtgattatcactaaactaaacttgaattaa 27761409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 22901273 - 22901221
Alignment:
Q  140 tcttattttctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaa 192  Q
    |||||| | |||| ||||||| |||||||||||||||||| ||||||||||||    
T  22901273 tcttatctgctaacctctaacaaacttgtaacaaacttcataacaaactaaaa 22901221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 192
Target Start/End: Complemental strand, 27756949 - 27756911
Alignment:
Q  154 ctctaaccaacttgtaacaaacttcaaaacaaactaaaa 192  Q
    ||||||| |||||||||||||||||| ||||||||||||    
T  27756949 ctctaacaaacttgtaacaaacttcataacaaactaaaa 27756911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 67 - 262
Target Start/End: Complemental strand, 33824070 - 33823882
Alignment:
Q  67 aattgtacaaggaatgaacttata-acaagcatgtgttaggttacttgaagcacaagtaaag-aacaaccc--taactcttattttctaaa--ctctaac 160  Q
    ||||||||||||||||| |||||| ||||||| |||||| ||||||||||||| |||||||| ||||||||  ||||||||||||||||||   ||||||    
T  33824070 aattgtacaaggaatgagcttatatacaagcaagtgttatgttacttgaagcagaagtaaagtaacaaccctataactcttattttctaaaacttctaac 33823971  T
Q  161 caacttgtaacaaacttcaaaacaaactaaaatcaaagtgtgattaatcaactaaacatgattatcactaatgtaaacttgaattaacaactaaactaac 260  Q
    ||||||||||||||||             ||| | |||||||||||||||||||| | ||||| ||| |||||||||| |||||||||||||||| ||||    
T  33823970 caacttgtaacaaact-------------aaaacgaagtgtgattaatcaactaatcgtgattgtcattaatgtaaacatgaattaacaactaaattaac 33823884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 140 - 225
Target Start/End: Original strand, 20830368 - 20830452
Alignment:
Q  140 tcttattttctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaatcaaagtgtgattaatcaactaaacatgattat 225  Q
    |||||||| |||| ||||||| |||||||||||||||||| |||||||| ||| | || ||||||||| |||||||||||||||||    
T  20830368 tcttatttgctaatctctaacaaacttgtaacaaacttcataacaaactgaaa-ctaaatgtgattaaccaactaaacatgattat 20830452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 140 - 210
Target Start/End: Original strand, 32486025 - 32486094
Alignment:
Q  140 tcttattttctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaatcaaagtgtgattaatca 210  Q
    |||||||| |||| ||||||| |||||||||||||||||| |||||||||||| |||| ||||||||||||    
T  32486025 tcttatttgctaacctctaacaaacttgtaacaaacttcataacaaactaaaa-caaaatgtgattaatca 32486094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 140 - 205
Target Start/End: Complemental strand, 19502426 - 19502362
Alignment:
Q  140 tcttattttctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaatcaaagtgtgatt 205  Q
    ||||||||||||| ||||||| |||||||||||||||||| |||||||||||| |||| |||||||    
T  19502426 tcttattttctaacctctaacaaacttgtaacaaacttcataacaaactaaaa-caaaatgtgatt 19502362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 140 - 247
Target Start/End: Complemental strand, 30695410 - 30695305
Alignment:
Q  140 tcttattttctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaatcaaagtgtgattaatcaactaaacatgattatcactaatgtaaact 239  Q
    |||||| | |||| ||||||| |||||||||||||||||| |||||||||||| |||| ||||||||| | ||| |   |||||||||||||  ||||||    
T  30695410 tcttatatactaacctctaacaaacttgtaacaaacttcataacaaactaaaa-caaaatgtgattaa-ccactgattgtgattatcactaaactaaact 30695313  T
Q  240 tgaattaa 247  Q
    ||||||||    
T  30695312 tgaattaa 30695305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 140 - 210
Target Start/End: Original strand, 26336845 - 26336915
Alignment:
Q  140 tcttattttctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaatcaaagtgtgattaatca 210  Q
    |||||||| |||| ||||||| ||| |||||||||| ||| |||||||||||| |||| ||||||||||||    
T  26336845 tcttatttgctaacctctaacaaacatgtaacaaacatcataacaaactaaaaacaaaatgtgattaatca 26336915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 140 - 225
Target Start/End: Original strand, 20808680 - 20808764
Alignment:
Q  140 tcttattttctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaatcaaagtgtgattaatcaactaaacatgattat 225  Q
    ||||||||  ||| ||||||| |||||||||| ||||||| |||||||| |||  ||| ||||||||| |||||||||||||||||    
T  20808680 tcttatttgttaacctctaacaaacttgtaactaacttcataacaaactgaaactaaa-tgtgattaaccaactaaacatgattat 20808764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 231
Target Start/End: Complemental strand, 43385067 - 43384980
Alignment:
Q  142 ttattttctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaatcaaagtgtgattaatcaactaaacatgattatcactaa 231  Q
    |||||| ||||  |||||| |||||||||||||||||| |||||||||||| |||| ||||||||| | |||||  ||||||||||||||    
T  43385067 ttatttgctaacttctaacaaacttgtaacaaacttcataacaaactaaaagcaaa-tgtgattaa-ccactaattatgattatcactaa 43384980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 192
Target Start/End: Original strand, 7099413 - 7099464
Alignment:
Q  141 cttattttctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaa 192  Q
    ||||||| |||| ||||||| |||||||||||||||||| ||||||||||||    
T  7099413 cttatttgctaacctctaacaaacttgtaacaaacttcataacaaactaaaa 7099464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 192
Target Start/End: Original strand, 7103982 - 7104033
Alignment:
Q  141 cttattttctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaa 192  Q
    ||||||| |||| ||||||| |||||||||||||||||| ||||||||||||    
T  7103982 cttatttgctaacctctaacaaacttgtaacaaacttcataacaaactaaaa 7104033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 192
Target Start/End: Complemental strand, 12018849 - 12018798
Alignment:
Q  141 cttattttctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaa 192  Q
    ||||||| |||| ||||||| |||||||||||||||||| ||||||||||||    
T  12018849 cttatttgctaacctctaacaaacttgtaacaaacttcataacaaactaaaa 12018798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 192
Target Start/End: Complemental strand, 12023407 - 12023356
Alignment:
Q  141 cttattttctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaa 192  Q
    ||||||| |||| ||||||| |||||||||||||||||| ||||||||||||    
T  12023407 cttatttgctaacctctaacaaacttgtaacaaacttcataacaaactaaaa 12023356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 192
Target Start/End: Complemental strand, 16794226 - 16794175
Alignment:
Q  141 cttattttctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaa 192  Q
    ||||||| |||| ||||||| |||||||||||||||||| ||||||||||||    
T  16794226 cttatttgctaacctctaacaaacttgtaacaaacttcataacaaactaaaa 16794175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 192
Target Start/End: Complemental strand, 16798787 - 16798736
Alignment:
Q  141 cttattttctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaa 192  Q
    ||||||| |||| ||||||| |||||||||||||||||| ||||||||||||    
T  16798787 cttatttgctaacctctaacaaacttgtaacaaacttcataacaaactaaaa 16798736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 154 - 247
Target Start/End: Original strand, 40371789 - 40371880
Alignment:
Q  154 ctctaaccaacttgtaacaaacttcaaaacaaactaaaatcaaagtgtgattaatcaactaaacatgattatcactaatgtaaacttgaattaa 247  Q
    ||||||| |||||||||||| ||||| |||||||||||| |||| |||||||||||  || |   |||||||||||||  ||||||||||||||    
T  40371789 ctctaacaaacttgtaacaatcttcataacaaactaaaa-caaaatgtgattaatc-tctgattgtgattatcactaaactaaacttgaattaa 40371880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 247
Target Start/End: Complemental strand, 10277312 - 10277216
Alignment:
Q  149 ctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaatcaaagtgtgattaatcaactaaacatgattatcactaatgtaaacttgaattaa 247  Q
    |||| ||||||| ||||||||||||| |||| ||||||||  |||| || ||||||||| | |||||   |||||||||||||  ||||||||||||||    
T  10277312 ctaatctctaactaacttgtaacaaaattcataacaaact-gaatctaaatgtgattaa-ccactaattgtgattatcactaaactaaacttgaattaa 10277216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 9e-21; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 140 - 247
Target Start/End: Original strand, 42234734 - 42234839
Alignment:
Q  140 tcttattttctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaatcaaagtgtgattaatcaactaaacatgattatcactaatgtaaact 239  Q
    |||||||| |||| ||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||| || |   |||||||||||||  ||||||    
T  42234734 tcttatttgctaacctctaacaaacttgtaacaaacttcataacaaactaaaa-caaagtgtgattaatca-ctgattgtgattatcactaaactaaact 42234831  T
Q  240 tgaattaa 247  Q
    ||||||||    
T  42234832 tgaattaa 42234839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 99 - 247
Target Start/End: Complemental strand, 41949962 - 41949814
Alignment:
Q  99 gtgttaggttacttgaagcacaagtaaagaacaaccctaactcttattttctaaac--tctaaccaacttgtaacaaacttcaaaacaaactaaaatcaa 196  Q
    |||||| || |||||||||||||||||  ||||||  |||| |||||||  ||||   | |||||||||||||||||||||||||||||||||||| ||     
T  41949962 gtgttatgtcacttgaagcacaagtaagtaacaactataacccttatttcttaaaacttgtaaccaacttgtaacaaacttcaaaacaaactaaaa-cag 41949864  T
Q  197 agtgtgattaatcaactaaacatgattatcactaatgtaaacttgaattaa 247  Q
    |||||||||||||| || |   |||||||||||||  ||| ||||||||||    
T  41949863 agtgtgattaatca-ctgattgtgattatcactaaactaagcttgaattaa 41949814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 140 - 247
Target Start/End: Complemental strand, 33072035 - 33071930
Alignment:
Q  140 tcttattttctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaatcaaagtgtgattaatcaactaaacatgattatcactaatgtaaact 239  Q
    |||||||| |||| ||| ||| |||||||||||||||||| ||||||||||||  |||||||||||||||| || |   |||||||||||||  ||||||    
T  33072035 tcttatttgctaacctccaacaaacttgtaacaaacttcataacaaactaaaag-aaagtgtgattaatca-ctgattgtgattatcactaaactaaact 33071938  T
Q  240 tgaattaa 247  Q
    ||||||||    
T  33071937 tgaattaa 33071930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 140 - 247
Target Start/End: Complemental strand, 28644679 - 28644574
Alignment:
Q  140 tcttattttctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaatcaaagtgtgattaatcaactaaacatgattatcactaatgtaaact 239  Q
    |||||| | |||| ||||||| |||||||||||||||||| |||||||||||| |||| ||||||||| | ||| |   |||||||||||||  ||||||    
T  28644679 tcttatctgctaacctctaacaaacttgtaacaaacttcataacaaactaaaa-caaaatgtgattaa-ccactgattgtgattatcactaaactaaact 28644582  T
Q  240 tgaattaa 247  Q
    ||||||||    
T  28644581 tgaattaa 28644574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 141 - 247
Target Start/End: Original strand, 43807524 - 43807628
Alignment:
Q  141 cttattttctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaatcaaagtgtgattaatcaactaaacatgattatcactaatgtaaactt 240  Q
    ||||||| |||| ||||||| |||||||||||||||||| |||||||||||| || | ||||||||| | ||| |   |||||||||||||  |||||||    
T  43807524 cttatttgctaacctctaacaaacttgtaacaaacttcataacaaactaaaa-cagaatgtgattaa-ccactgattgtgattatcactaaactaaactt 43807621  T
Q  241 gaattaa 247  Q
    |||||||    
T  43807622 gaattaa 43807628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 141 - 247
Target Start/End: Original strand, 43812083 - 43812187
Alignment:
Q  141 cttattttctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaatcaaagtgtgattaatcaactaaacatgattatcactaatgtaaactt 240  Q
    ||||||| |||| ||||||| |||||||||||||||||| |||||||||||| || | ||||||||| | ||| |   |||||||||||||  |||||||    
T  43812083 cttatttgctaacctctaacaaacttgtaacaaacttcataacaaactaaaa-cagaatgtgattaa-ccactgattgtgattatcactaaactaaactt 43812180  T
Q  241 gaattaa 247  Q
    |||||||    
T  43812181 gaattaa 43812187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 192
Target Start/End: Original strand, 197723 - 197774
Alignment:
Q  141 cttattttctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaa 192  Q
    ||||||| |||| ||||||| |||||||||||||||||| ||||||||||||    
T  197723 cttatttgctaacctctaacaaacttgtaacaaacttcataacaaactaaaa 197774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 192
Target Start/End: Original strand, 202241 - 202292
Alignment:
Q  141 cttattttctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaa 192  Q
    ||||||| |||| ||||||| |||||||||||||||||| ||||||||||||    
T  202241 cttatttgctaacctctaacaaacttgtaacaaacttcataacaaactaaaa 202292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 192
Target Start/End: Original strand, 312560 - 312611
Alignment:
Q  141 cttattttctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaa 192  Q
    ||||||| |||| ||||||| |||||||||||||||||| ||||||||||||    
T  312560 cttatttgctaacctctaacaaacttgtaacaaacttcataacaaactaaaa 312611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 192
Target Start/End: Original strand, 317078 - 317129
Alignment:
Q  141 cttattttctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaa 192  Q
    ||||||| |||| ||||||| |||||||||||||||||| ||||||||||||    
T  317078 cttatttgctaacctctaacaaacttgtaacaaacttcataacaaactaaaa 317129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 30405860 - 30405912
Alignment:
Q  140 tcttattttctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaa 192  Q
    |||||| | |||| ||||||| |||||||||||||||||| ||||||||||||    
T  30405860 tcttatctactaacctctaacaaacttgtaacaaacttcataacaaactaaaa 30405912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 140 - 247
Target Start/End: Original strand, 30410369 - 30410474
Alignment:
Q  140 tcttattttctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaatcaaagtgtgattaatcaactaaacatgattatcactaatgtaaact 239  Q
    |||||| | |||| ||||||| |||||||||||||||||| |||||| ||||| || | ||||||||| | ||| |   |||||||||||||  ||||||    
T  30410369 tcttatctactaacctctaacaaacttgtaacaaacttcataacaaattaaaa-cagaatgtgattaa-ccactgattgtgattatcactaaactaaact 30410466  T
Q  240 tgaattaa 247  Q
    ||||||||    
T  30410467 tgaattaa 30410474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 181 - 224
Target Start/End: Original strand, 31474662 - 31474704
Alignment:
Q  181 aacaaactaaaatcaaagtgtgattaatcaactaaacatgatta 224  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||    
T  31474662 aacaaactaaaatcaaa-tgtgattaaccaactaaacatgatta 31474704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 140 - 247
Target Start/End: Complemental strand, 9697705 - 9697598
Alignment:
Q  140 tcttattttctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaatcaaagtgtgattaatcaactaaacatgattatcact-aatgtaaac 238  Q
    |||||||| |||| ||||||| |||||||||||||||||| |||||||||||| |||| ||||||||||| |||||   ||||||||||| ||  |||||    
T  9697705 tcttatttgctaacctctaacaaacttgtaacaaacttcataacaaactaaaaacaaaatgtgattaatc-actaattgtgattatcactaaaactaaac 9697607  T
Q  239 ttgaattaa 247  Q
    |||||||||    
T  9697606 ttgaattaa 9697598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 140 - 210
Target Start/End: Complemental strand, 43547842 - 43547772
Alignment:
Q  140 tcttattttctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaatcaaagtgtgattaatca 210  Q
    ||||||||  ||| ||||||| |||||||||||||||||| |||||||||||| |||| ||| ||||||||    
T  43547842 tcttatttgttaacctctaacaaacttgtaacaaacttcataacaaactaaaaacaaaatgtaattaatca 43547772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 162 - 258
Target Start/End: Original strand, 53353037 - 53353131
Alignment:
Q  162 aacttgtaacaaacttcaaaacaaactaaaatcaaagtgtgattaatcaactaaacatgattatcactaatgtaaacttgaattaacaactaaacta 258  Q
    |||||||||||||||| |||  ||||||||| |||| ||| || ||||| |||| |||||||| ||||||| | ||||||||||| |||||||||||    
T  53353037 aacttgtaacaaactttaaattaaactaaaa-caaaatgtaatcaatcatctaatcatgattaacactaatct-aacttgaattaccaactaaacta 53353131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 192
Target Start/End: Complemental strand, 755934 - 755895
Alignment:
Q  153 actctaaccaacttgtaacaaacttcaaaacaaactaaaa 192  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  755934 actctaacaaacttgtaacaaacttcaaaacaaactaaaa 755895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 247
Target Start/End: Original strand, 11004443 - 11004548
Alignment:
Q  140 tcttattttctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaatcaaagtgtgattaatcaactaaacatgattatcactaatgtaaact 239  Q
    |||||||| |||| ||||||| |||||||||||| ||||| ||||| |||||| |||| |||||||| || ||| |   |||||||||||||  ||||||    
T  11004443 tcttatttgctaacctctaacaaacttgtaacaatcttcataacaagctaaaa-caaaatgtgattattc-actgattgtgattatcactaaactaaact 11004540  T
Q  240 tgaattaa 247  Q
    ||||||||    
T  11004541 tgaattaa 11004548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 21847228 - 21847162
Alignment:
Q  140 tcttattttctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaatcaaagtgtgattaa 207  Q
    |||||| | |||| ||||||| |||||||||||||||||| |||||||||||| |||| |||||||||    
T  21847228 tcttatctgctaacctctaacaaacttgtaacaaacttcataacaaactaaaa-caaactgtgattaa 21847162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 21850318 - 21850252
Alignment:
Q  140 tcttattttctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaatcaaagtgtgattaa 207  Q
    |||||| | |||| ||||||| |||||||||||||||||| |||||||||||| |||| |||||||||    
T  21850318 tcttatctgctaacctctaacaaacttgtaacaaacttcataacaaactaaaa-caaactgtgattaa 21850252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 192
Target Start/End: Original strand, 54171963 - 54172014
Alignment:
Q  141 cttattttctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaa 192  Q
    ||||||| |||| ||||||| |||||||||||||||||| ||||||||||||    
T  54171963 cttatttgctaacctctaacaaacttgtaacaaacttcataacaaactaaaa 54172014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 264
Target Start/End: Complemental strand, 9105433 - 9105272
Alignment:
Q  101 gttaggttacttgaagcacaagtaaag-aacaacc-ctaactcttattttctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaatcaaag 198  Q
    |||||||| ||||||||||||| || | ||||| | |||  ||||||||  ||| ||||||| ||||||||||| |||||| |||||||| ||| ||||     
T  9105433 gttaggttgcttgaagcacaagcaatgtaacaaactctagatcttatttgttaacctctaacaaacttgtaacatacttcataacaaact-aaagcaaaa 9105335  T
Q  199 tgtgattaatcaactaaacatgattatcactaatgtaaacttgaattaacaactaaactaacaata 264  Q
    ||||||||||| | | |   |||||||||||||  |||||||||||||| ||| ||||||||||||    
T  9105334 tgtgattaatc-attgattgtgattatcactaaactaaacttgaattaa-aac-aaactaacaata 9105272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 141 - 192
Target Start/End: Original strand, 54167383 - 54167434
Alignment:
Q  141 cttattttctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaa 192  Q
    |||||||  ||| ||||||| |||||||||||||||||| ||||||||||||    
T  54167383 cttatttggtaacctctaacaaacttgtaacaaacttcataacaaactaaaa 54167434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 187
Target Start/End: Complemental strand, 755858 - 755824
Alignment:
Q  153 actctaaccaacttgtaacaaacttcaaaacaaac 187  Q
    |||||||| ||||||||||||||||||||||||||    
T  755858 actctaacaaacttgtaacaaacttcaaaacaaac 755824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 247
Target Start/End: Original strand, 39399171 - 39399267
Alignment:
Q  149 ctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaatcaaagtgtgattaatcaactaaacatgattatcactaatgtaaacttgaattaa 247  Q
    |||| ||||||| ||||||||||||| |||| ||||||||  |||| || ||||||||| | |||||   |||||||||||||  ||||||||||||||    
T  39399171 ctaatctctaactaacttgtaacaaaattcataacaaact-gaatctaaatgtgattaa-ccactaattgtgattatcactaaactaaacttgaattaa 39399267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 141 - 210
Target Start/End: Complemental strand, 7623 - 7555
Alignment:
Q  141 cttattttctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaatcaaagtgtgattaatca 210  Q
    ||||||| |||| ||||||| |||||||||||||||||| |||||||||||| |||| ||||||||||||    
T  7623 cttatttgctaacctctaacaaacttgtaacaaacttcataacaaactaaaa-caaattgtgattaatca 7555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 192
Target Start/End: Complemental strand, 3098 - 3047
Alignment:
Q  141 cttattttctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaa 192  Q
    ||||||| |||| ||||||| |||||||||||||||||| ||||||||||||    
T  3098 cttatttgctaacctctaacaaacttgtaacaaacttcataacaaactaaaa 3047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 269
Target Start/End: Original strand, 16588532 - 16588643
Alignment:
Q  154 ctctaaccaacttgtaacaaacttcaaaacaaactaaaatcaaagtgtgattaatcaactaaacatgattatcactaatgtaaacttgaattaacaacta 253  Q
    ||||||| |||||||||||||||||| |||||||||||| |||| ||||||||| | ||| |   |||||||||||||  |||||||||||||| ||| |    
T  16588532 ctctaacaaacttgtaacaaacttcataacaaactaaaa-caaaatgtgattaa-ccacttattgtgattatcactaaactaaacttgaattaa-aac-a 16588627  T
Q  254 aactaacaataacaac 269  Q
    ||||||||||| ||||    
T  16588628 aactaacaatatcaac 16588643  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 247
Target Start/End: Original strand, 43591863 - 43591966
Alignment:
Q  142 ttattttctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaatcaaagtgtgattaatcaactaaacatgattatcactaatgtaaacttg 241  Q
    |||||| |||| ||||||| |  ||||||||||||||| ||||||||||||| |||||| ||||||||| || |   |||||||||||||  ||||||||    
T  43591863 ttatttgctaacctctaacaatattgtaacaaacttcataacaaactaaaat-aaagtgcgattaatca-ctgattgtgattatcactaaactaaacttg 43591960  T
Q  242 aattaa 247  Q
    ||||||    
T  43591961 aattaa 43591966  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 247
Target Start/End: Complemental strand, 10504544 - 10504448
Alignment:
Q  149 ctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaatcaaagtgtgattaatcaactaaacatgattatcactaatgtaaacttgaattaa 247  Q
    |||| ||||||| ||||||||||||| |||| ||||||||  |||| || ||||||||||| |||||   |||||||||||||  ||||||||||||||    
T  10504544 ctaatctctaactaacttgtaacaaaattcataacaaact-gaatctaaatgtgattaatc-actaattgtgattatcactaaactaaacttgaattaa 10504448  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 39793948 - 39793896
Alignment:
Q  140 tcttattttctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaa 192  Q
    |||||| | |||| ||||||| |||||||||||||||||| ||||||||||||    
T  39793948 tcttatctactaacctctaacaaacttgtaacaaacttcataacaaactaaaa 39793896  T

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Target: scaffold0044 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 192
Target Start/End: Original strand, 44904 - 44955
Alignment:
Q  141 cttattttctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaa 192  Q
    ||||||| |||| ||||||| |||||||||||||||||| ||||||||||||    
T  44904 cttatttgctaacctctaacaaacttgtaacaaacttcataacaaactaaaa 44955  T

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Target: scaffold0044; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 192
Target Start/End: Original strand, 49484 - 49535
Alignment:
Q  141 cttattttctaaactctaaccaacttgtaacaaacttcaaaacaaactaaaa 192  Q
    ||||||| |||| ||||||| |||||||||||||||||| ||||||||||||    
T  49484 cttatttgctaacctctaacaaacttgtaacaaacttcataacaaactaaaa 49535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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