View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5083_low_9 (Length: 258)
Name: NF5083_low_9
Description: NF5083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5083_low_9 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 4 - 258
Target Start/End: Complemental strand, 44356361 - 44356102
Alignment:
| Q |
4 |
atgtcgaagaaaatcttaatataata---tcaattgaaactcaacttgctataagatatattgaataataac---gtttataccattttttgaaataatt |
97 |
Q |
| |
|
||||| || ||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
44356361 |
atgtcaaacaaaatctgaatataataacatcaattgaaactcaacttgttataagatatattgaataataaccaagtttataccattttttgaaataatt |
44356262 |
T |
|
| Q |
98 |
gagttattttgagaaataaattggacattaaaaattgataacaagatagatagttaacacaatttaaagatttgattatttacattgaaaaatgacttga |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44356261 |
gagttattttgagaaataaattggacattaaaaattgataacaagttagatagtta-cataatttaaagatttgattatttacattgaaaaatgacttga |
44356163 |
T |
|
| Q |
198 |
ttgacattgataaaaataagaagaaaaaatgcatacctaaaattttgatgaacatcatttt |
258 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44356162 |
ttgacattgataaaaataagaagaaaaaatgcatacctaaaattttgatgaacatcatttt |
44356102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University