View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5084-Insertion-11 (Length: 283)
Name: NF5084-Insertion-11
Description: NF5084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5084-Insertion-11 |
 | |
|
| [»] chr4 (12 HSPs) |
| |
|
| [»] chr1 (4 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 7 - 283
Target Start/End: Original strand, 23408563 - 23408839
Alignment:
| Q |
7 |
agtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgctgtctgaatttcccttgaagtgattgttggc |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
23408563 |
agtcacagccttggtgccttcagaaacagcatgcttggccaattctccaggaagaacaagtctgaccgcggtctgaatttcccttgaagtgattgttggc |
23408662 |
T |
|
| Q |
107 |
ttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaatatatcattgatgaaactgttcattattcccatgtttttgcatgagatac |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||| ||||| |||||||| |
|
|
| T |
23408663 |
ttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatcgctttgcttgagatac |
23408762 |
T |
|
| Q |
207 |
caatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtttgtttctacattcttcttgcttctcttc |
283 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
23408763 |
caatgtctgggtgaacttgtttcagaactttgaagatgtagatcttgtatgtttctacattcttcttacttctcttc |
23408839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 8 - 283
Target Start/End: Original strand, 23453396 - 23453671
Alignment:
| Q |
8 |
gtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgctgtctgaatttcccttgaagtgattgttggct |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
23453396 |
gtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagactgactgcagtctgaatttcccttgaagtgattgttggct |
23453495 |
T |
|
| Q |
108 |
tcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaatatatcattgatgaaactgttcattattcccatgtttttgcatgagatacc |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||| |||| ||||||||| |
|
|
| T |
23453496 |
tcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatggccttgcttgagatacc |
23453595 |
T |
|
| Q |
208 |
aatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtttgtttctacattcttcttgcttctcttc |
283 |
Q |
| |
|
||||||||||||||| || ||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
23453596 |
aatgtctgggtgaacatgattcagaactttgaagatgtagatcttgtatgtttctacattcttcttgcttctcttc |
23453671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 7 - 283
Target Start/End: Original strand, 23415732 - 23416008
Alignment:
| Q |
7 |
agtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgctgtctgaatttcccttgaagtgattgttggc |
106 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
23415732 |
agtcacagccttggtaccctcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggc |
23415831 |
T |
|
| Q |
107 |
ttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaatatatcattgatgaaactgttcattattcccatgtttttgcatgagatac |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||| |||| |||||||| |
|
|
| T |
23415832 |
ttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatggccttgcttgagatac |
23415931 |
T |
|
| Q |
207 |
caatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtttgtttctacattcttcttgcttctcttc |
283 |
Q |
| |
|
|||||||||||||||| || ||||| |||||||| ||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
23415932 |
caatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttcaacattcttcttgcttctcttc |
23416008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 7 - 283
Target Start/End: Complemental strand, 23868987 - 23868711
Alignment:
| Q |
7 |
agtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgctgtctgaatttcccttgaagtgattgttggc |
106 |
Q |
| |
|
||||||||| || || ||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
23868987 |
agtcacagcttttgttccttcagaaacagcatgtttggccaattcaccaggaagaacaagtctgacagcagtctgaatttcccttgaagtgattgttggc |
23868888 |
T |
|
| Q |
107 |
ttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaatatatcattgatgaaactgttcattattcccatgtttttgcatgagatac |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
23868887 |
ttcttgttgtaacgagcaagtctggatgattcttgagcaagtttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagatac |
23868788 |
T |
|
| Q |
207 |
caatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtttgtttctacattcttcttgcttctcttc |
283 |
Q |
| |
|
|||||||||||||||| || ||||| |||||||| ||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
23868787 |
caatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttcaacattcttcttgcttctcttc |
23868711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 8 - 283
Target Start/End: Complemental strand, 24307477 - 24307202
Alignment:
| Q |
8 |
gtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgctgtctgaatttcccttgaagtgattgttggct |
107 |
Q |
| |
|
|||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
24307477 |
gtcacagctttggtaccctcagaaacagcatgcttggccaattcaccaggaagaacaagtctgacagcagtctgaatttcccttgaagtgattgttggct |
24307378 |
T |
|
| Q |
108 |
tcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaatatatcattgatgaaactgttcattattcccatgtttttgcatgagatacc |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
24307377 |
tcttgttgtaacgagcaagtctggatgattcttgagctagtttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagatacc |
24307278 |
T |
|
| Q |
208 |
aatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtttgtttctacattcttcttgcttctcttc |
283 |
Q |
| |
|
|||||||||||||||||||||||| || ||||| || |||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
24307277 |
aatgtctgggtgaacttgtttcagaaccttgaagatatagatcttgtatgtttcaacattcttcttgcttctcttc |
24307202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 8 - 283
Target Start/End: Complemental strand, 23886081 - 23885806
Alignment:
| Q |
8 |
gtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgctgtctgaatttcccttgaagtgattgttggct |
107 |
Q |
| |
|
|||||||| ||||| || ||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
23886081 |
gtcacagctttggttccctcagagacagcatgcttggccaattcaccaggaagaacaagcctgactgcagtctgaatttcccttgaagtgattgttggct |
23885982 |
T |
|
| Q |
108 |
tcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaatatatcattgatgaaactgttcattattcccatgtttttgcatgagatacc |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||| |||| ||||||||| |
|
|
| T |
23885981 |
tcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatggccttgcttgagatacc |
23885882 |
T |
|
| Q |
208 |
aatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtttgtttctacattcttcttgcttctcttc |
283 |
Q |
| |
|
||||||||||||||| || ||||| |||||||| ||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
23885881 |
aatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttcaacattcttcttgcttctcttc |
23885806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 8 - 283
Target Start/End: Complemental strand, 23402328 - 23402053
Alignment:
| Q |
8 |
gtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgctgtctgaatttcccttgaagtgattgttggct |
107 |
Q |
| |
|
|||||||| ||||| || || || ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
23402328 |
gtcacagctttggttccctctgagacagcatgcttggccaattcaccaggaagaacaagcctgactgcagtctgaatttcccttgaagtgattgttggct |
23402229 |
T |
|
| Q |
108 |
tcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaatatatcattgatgaaactgttcattattcccatgtttttgcatgagatacc |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||| |||| ||||||||| |
|
|
| T |
23402228 |
tcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatggccttgcttgagatacc |
23402129 |
T |
|
| Q |
208 |
aatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtttgtttctacattcttcttgcttctcttc |
283 |
Q |
| |
|
||||||||||||||| || ||||| |||||||| ||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
23402128 |
aatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttctacattcttcttacttctcttc |
23402053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 11 - 283
Target Start/End: Complemental strand, 26832986 - 26832714
Alignment:
| Q |
11 |
acagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgctgtctgaatttcccttgaagtgattgttggcttct |
110 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||| || |||||||| ||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
26832986 |
acagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaatttcccttgaagtgattgttggcttct |
26832887 |
T |
|
| Q |
111 |
tgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaatatatcattgatgaaactgttcattattcccatgtttttgcatgagataccaat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||| || |||||| ||||| |||||||||||| |
|
|
| T |
26832886 |
tgttgtaacgagcaagtctggatgattcttgagcgagtttctcgaagatatcattgatgaaactgttcatgatacccatggctttgcttgagataccaat |
26832787 |
T |
|
| Q |
211 |
gtctgggtgaacttgtttcagtactttgaatatgtagatcttgtttgtttctacattcttcttgcttctcttc |
283 |
Q |
| |
|
||||||||||||||||||||| || ||||| ||||||||||||| |||||| || ||||||||||||||||| |
|
|
| T |
26832786 |
gtctgggtgaacttgtttcagaaccttgaagatgtagatcttgtatgtttcaacgctcttcttgcttctcttc |
26832714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 11 - 283
Target Start/End: Complemental strand, 26434275 - 26434003
Alignment:
| Q |
11 |
acagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgctgtctgaatttcccttgaagtgattgttggcttct |
110 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||| || |||||||| ||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
26434275 |
acagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaatttcccttgaagtgattgttggcttct |
26434176 |
T |
|
| Q |
111 |
tgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaatatatcattgatgaaactgttcattattcccatgtttttgcatgagataccaat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||| || |||||| ||||| |||||||||||| |
|
|
| T |
26434175 |
tgttgtaacgagcaagtctggatgattcttgagcgagtttctcgaagatatcattgatgaaactgttcatgatacccatggctttgcttgagataccaat |
26434076 |
T |
|
| Q |
211 |
gtctgggtgaacttgtttcagtactttgaatatgtagatcttgtttgtttctacattcttcttgcttctcttc |
283 |
Q |
| |
|
|||||| |||||||||||||| || ||||| ||||||||||||| |||||| || ||||||||||||||||| |
|
|
| T |
26434075 |
gtctggatgaacttgtttcagaaccttgaagatgtagatcttgtatgtttcaacgctcttcttgcttctcttc |
26434003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 11 - 283
Target Start/End: Complemental strand, 26436055 - 26435783
Alignment:
| Q |
11 |
acagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgctgtctgaatttcccttgaagtgattgttggcttct |
110 |
Q |
| |
|
||||||||||| || ||||||||| ||||||||||||||||||| || |||||||| ||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
26436055 |
acagccttggtaccctcagaaacatcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaatttcccttgaagtgattgttggcttct |
26435956 |
T |
|
| Q |
111 |
tgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaatatatcattgatgaaactgttcattattcccatgtttttgcatgagataccaat |
210 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| || |||||||| ||||||||||||||||||||||| || |||||| ||||| |||||||||||| |
|
|
| T |
26435955 |
tgttgtaacgagcaagtctggaagattcttgagtgagtttctcgaagatatcattgatgaaactgttcatgatacccatggctttgcttgagataccaat |
26435856 |
T |
|
| Q |
211 |
gtctgggtgaacttgtttcagtactttgaatatgtagatcttgtttgtttctacattcttcttgcttctcttc |
283 |
Q |
| |
|
||||||||||||||||||||| || ||||| ||||||||||||| |||||| || ||||||||||||||||| |
|
|
| T |
26435855 |
gtctgggtgaacttgtttcagaaccttgaagatgtagatcttgtatgtttcaacgctcttcttgcttctcttc |
26435783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 11 - 283
Target Start/End: Original strand, 34662068 - 34662340
Alignment:
| Q |
11 |
acagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgctgtctgaatttcccttgaagtgattgttggcttct |
110 |
Q |
| |
|
||||| ||||| || ||||| ||||||||||| |||||||| |||||||||||||| || || || |||||||||||||| ||||| || || ||||||| |
|
|
| T |
34662068 |
acagctttggtaccctcagacacagcatgcttagccaattctccaggaagaacaagcctaacagcagtctgaatttccctcgaagttatcgtcggcttct |
34662167 |
T |
|
| Q |
111 |
tgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaatatatcattgatgaaactgttcattattcccatgtttttgcatgagataccaat |
210 |
Q |
| |
|
|||| || | ||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| || |||||| ||||| |||||||||||| |
|
|
| T |
34662168 |
tgttataccttgcaagtctggaagattcttgagcgagcttctcgaagatatcattgatgaaactgttcataatacccatggctttgcttgagataccaat |
34662267 |
T |
|
| Q |
211 |
gtctgggtgaacttgtttcagtactttgaatatgtagatcttgtttgtttctacattcttcttgcttctcttc |
283 |
Q |
| |
|
||| ||||||||||||||||| || ||||| ||||||||||||| ||||| || |||||||| |||||||| |
|
|
| T |
34662268 |
gtcagggtgaacttgtttcagaaccttgaagatgtagatcttgtaggtttcaacgctcttcttgtttctcttc |
34662340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 40 - 172
Target Start/End: Original strand, 23451788 - 23451920
Alignment:
| Q |
40 |
cttggccaattcaccaggaagaacaagtctgactgctgtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattct |
139 |
Q |
| |
|
||||||||||||||| || |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
23451788 |
cttggccaattcaccgggcagaacaagcctgactgcggtctgaatttcccttgaagtgattgttggcttcttgttgtagcgagcaagtctggagtattct |
23451887 |
T |
|
| Q |
140 |
tgagcaagcttctcgaatatatcattgatgaaa |
172 |
Q |
| |
|
||||| |||||||| || ||||| ||||||||| |
|
|
| T |
23451888 |
tgagcgagcttctcaaagatatcgttgatgaaa |
23451920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 4e-38; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 11 - 283
Target Start/End: Complemental strand, 41670651 - 41670379
Alignment:
| Q |
11 |
acagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgctgtctgaatttcccttgaagtgattgttggcttct |
110 |
Q |
| |
|
||||||||||| || ||||| ||||||||||| || | |||||| || |||||||| | || || ||||| || |||| ||||||||||| ||||||| |
|
|
| T |
41670651 |
acagccttggttccctcagagacagcatgcttagcaagttcaccggggagaacaagacgaacagcagtctgtatctcccgagaagtgattgtaggcttct |
41670552 |
T |
|
| Q |
111 |
tgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaatatatcattgatgaaactgttcattattcccatgtttttgcatgagataccaat |
210 |
Q |
| |
|
||||||| | ||||||||||| ||||| ||||| |||||||| || |||||||||||||| |||||||| || ||||| |||| |||||||||||| |
|
|
| T |
41670551 |
tgttgtacctcgcaagtctggaagattcctgagcgagcttctcaaagatatcattgatgaagctgttcatgatccccatagccttgcttgagataccaat |
41670452 |
T |
|
| Q |
211 |
gtctgggtgaacttgtttcagtactttgaatatgtagatcttgtttgtttctacattcttcttgcttctcttc |
283 |
Q |
| |
|
||| || ||||| || || || || ||||| ||||||||||||| ||||| || |||||||| |||||||| |
|
|
| T |
41670451 |
gtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttcaacgctcttcttgtttctcttc |
41670379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 33216699 - 33216594
Alignment:
| Q |
8 |
gtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgctgtctgaatttcccttgaagtgattgttggct |
107 |
Q |
| |
|
|||||||||||||| || |||||||||||||| ||||||||||||||| |||||||||||||||| || || ||||||| |||||||||||||||||||| |
|
|
| T |
33216699 |
gtcacagccttggtaccctcagaaacagcatgtttggccaattcaccaagaagaacaagtctgacagcagtttgaattttccttgaagtgattgttggct |
33216600 |
T |
|
| Q |
108 |
tcttgt |
113 |
Q |
| |
|
|||||| |
|
|
| T |
33216599 |
tcttgt |
33216594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 107 - 282
Target Start/End: Complemental strand, 40795924 - 40795749
Alignment:
| Q |
107 |
ttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaatatatcattgatgaaactgttcattattcccatgtttttgcatgagatac |
206 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| ||||| |||||||| || || |||||||||||||||||||| || ||||| |||| ||||| | |
|
|
| T |
40795924 |
ttcttgttgtagcgagcgagtctggatgattcctgagcgagcttctcaaagatgtcattgatgaaactgttcatgatccccatagccttgctggagattc |
40795825 |
T |
|
| Q |
207 |
caatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtttgtttctacattcttcttgcttctctt |
282 |
Q |
| |
|
||||||| || ||||| || || || || ||||| ||||||||||||| |||||||| |||||||| ||||||| |
|
|
| T |
40795824 |
caatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctacgctcttcttgtttctctt |
40795749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 189
Target Start/End: Complemental strand, 29391717 - 29391539
Alignment:
| Q |
11 |
acagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgctgtctgaatttcccttgaagtgattgttggcttct |
110 |
Q |
| |
|
||||||||||| ||||| ||||||||||| || ||||||||||| |||||||| | | || || || ||||| ||||| || || || || || |||| |
|
|
| T |
29391717 |
acagccttggttccttcggaaacagcatgtttcgccaattcaccgggaagaaccaaacgcacagccgtttgaatctccctcgacgtaatcgtcggtttct |
29391618 |
T |
|
| Q |
111 |
tgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaatatatcattgatgaaactgttcattattcccat |
189 |
Q |
| |
|
||||||||||||| | ||| || | ||| ||||| || ||||| || ||||||||||||||||||||||| || ||||| |
|
|
| T |
29391617 |
tgttgtaacgagccaatctagaagcttcctgagcgagtttctcaaagatatcattgatgaaactgttcataatccccat |
29391539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 47317536 - 47317431
Alignment:
| Q |
8 |
gtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgctgtctgaatttcccttgaagtgattgttggct |
107 |
Q |
| |
|
|||||||| ||||| || ||||||||| |||| |||||||||||||||||||||| ||||||||| | || |||||||||||||||||||||||||||| |
|
|
| T |
47317536 |
gtcacagctttggtaccctcagaaacaacatgtttggccaattcaccaggaagaataagtctgacaacagtttgaatttcccttgaagtgattgttggct |
47317437 |
T |
|
| Q |
108 |
tcttgt |
113 |
Q |
| |
|
|||||| |
|
|
| T |
47317436 |
tcttgt |
47317431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 254
Target Start/End: Original strand, 40180297 - 40180540
Alignment:
| Q |
11 |
acagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgctgtctgaatttcccttgaagtgattgttggcttct |
110 |
Q |
| |
|
|||||||| || ||||||||||||||||| || |||||||| ||||||||||| | ||| || || || ||||| ||||| ||||| || || ||||||| |
|
|
| T |
40180297 |
acagccttagtcccttcagaaacagcatgtttagccaattctccaggaagaaccaatctaacagcagtttgaatctccctagaagtaatcgtcggcttct |
40180396 |
T |
|
| Q |
111 |
tgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaatatatcattgatgaaactgttcattattcccatgtttttgcatgagataccaat |
210 |
Q |
| |
|
|||| || | ||| | | || ||||| ||||| || ||||| || ||||| || |||||||||||||| |||||||| |||| ||| | ||| || |
|
|
| T |
40180397 |
tgttatacctagccaaacgagacgattcctgagcgagtttctcaaagatatcgttaatgaaactgttcatgattcccatagccttgcttgaaacaccgat |
40180496 |
T |
|
| Q |
211 |
gtctgggtgaacttgtttcagtactttgaatatgtagatcttgt |
254 |
Q |
| |
|
|| || ||||| |||||||| || ||||| ||||| ||||||| |
|
|
| T |
40180497 |
atcaggatgaacctgtttcagaaccttgaagatgtatatcttgt |
40180540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 14715485 - 14715436
Alignment:
| Q |
26 |
tcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgc |
75 |
Q |
| |
|
||||| ||| |||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
14715485 |
tcagacacaacatgcttggccaattctccaggaagaacaagtctcactgc |
14715436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University